# Makefile for the Ale alignment editor.

EMACS=@EMACS@

# This must be an ANSI C compiler.  Sun's cc is *not* ANSI -- if
# you're not sure, and your system has gcc, just use gcc.
CC = @CC@

CFLAGS = @CFLAGS@

VERSION=@VERSION@
SVN_REVISION=@SVN_REVISION@
ARCHITECTURE=@ARCHITECTURE@

# PREFIXDIR is the "top level" directory in which to place the
# installed gene editor.
# By default things will be installed in the following subdirectories
# of PREFIXDIR: PREFIXDIR/bin and PREFIXDIR/lib/ale.
PREFIXDIR=@prefix@

### If you set PREFIXDIR, it's unlikely that you want to change any of
### the subdirs below:

# Where to put the phylo server, file reader executables, and analyzers
BINDIR=${PREFIXDIR}/bin

# Where to put data files that ale uses
COMMONLIBDIR=${PREFIXDIR}/lib/ale
LIBDIR=${COMMONLIBDIR}/${VERSION}

# Where to put architecture-specific files, like utility executables 
ARCHDIR=${LIBDIR}/${ARCHITECTURE}

# Where local Emacs lisp code is normally stored.  You probably want
# this to be your "site-lisp" directory (i.e.: default.el's home).
LISPDIR=${LIBDIR}/lisp

# When we get around to Info documentation, this will be useful.
INFODIR=${PREFIXDIR}/info

# If your site does not have gzip, then use the commented out lines
# below instead of the uncommented ones:
# GZIP=compress
# GZIP_EXT=.Z
GZIP=gzip --best
GZIP_EXT=.gz

### You should not need to modify anything below this line.
SOURCE_DIRS=phylo readers analyses lisp docs
DISTDIR=ale-${VERSION}.${SVN_REVISION}
DIST_NAME=ale-${VERSION}.${SVN_REVISION}
DIST_LOC=www
VC_SUBDIR=.svn

all: ale lisp/gene-version.el
	cd phylo;    ${MAKE} all
	cd readers;  ${MAKE} all
	cd analyses; ${MAKE} all
	@true Since we include formatted documentation in the disty,
	@true this should not try to do anything unless you have actually
	@true changed some of the documentation sources.
	cd docs;     ${MAKE} all
	cd lisp;     ${MAKE} all

ale: ale.in Makefile
	sed < ale.in > ale \
	  -e 's;^EMACS=;&${EMACS};' \
	  -e 's;^ALE_LISPDIR=;&${LISPDIR};' \
	  -e 's;^ALE_ARCHDIR=;&${ARCHDIR};'


lisp/gene-version.el: 
	cd lisp; \
	  rm -f gene-version.el; \
	  echo "(defconst gene-version \"${VERSION}\")" > gene-version.el; \
	  echo "(provide 'gene-version)" >> gene-version.el;

### This is getting hopelessly circular...  But GNU Make seems to
### handle it just fine.
Makefile: Makefile.in configure
	./configure
configure: configure.in
	autoconf

install: all
	@echo
	@echo "Installing the ALE executable..."
	[ -d ${BINDIR} ] || mkdir -p ${BINDIR}
	chmod a+x ale
	cp ale ${BINDIR}/ale-${VERSION}
	rm -f ${BINDIR}/ale
	ln ${BINDIR}/ale-${VERSION} ${BINDIR}/ale

	@echo
	cd analyses; ${MAKE} install
	@echo
	cd docs;     ${MAKE} install
	@echo
	cd lisp;     ${MAKE} install
	@echo
	cd phylo;    ${MAKE} install
	@echo
	cd readers;  ${MAKE} install

	@echo
	@echo "Done Installing."

uninstall:
	@echo
	@echo "Uninstalling the ALE executable..."
	rm ${BINDIR}/ale
	rm ${BINDIR}/ale-${VERSION}

	@echo
	cd analyses; ${MAKE} uninstall
	@echo
	cd docs;     ${MAKE} uninstall
	@echo
	cd lisp;     ${MAKE} uninstall
	@echo
	cd phylo;    ${MAKE} uninstall
	@echo
	cd readers;  ${MAKE} uninstall

	@echo
	-rmdir ${ARCHDIR}
	-rmdir ${LISPDIR}
	-rmdir ${LIBDIR}
	-rmdir ${COMMONLIBDIR}

	@echo
	@echo "Done Uninstalling."

clean:
	rm -f *~
	rm -f ale
	cd lisp;     ${MAKE} clean
	cd docs;     ${MAKE} clean
	cd phylo;    ${MAKE} clean
	cd readers;  ${MAKE} clean
	cd analyses; ${MAKE} clean


ale.info: docs/ale.texi
	(cd docs; makeinfo ale.texi)


dist-dir:
	rm -rf ${DIST_LOC}/${DIST_NAME}
	mkdir ${DIST_LOC}/${DIST_NAME}
	ln configure.in configure config.guess ${DIST_LOC}/${DIST_NAME}
	ln Makefile.in ale.in ${DIST_LOC}/${DIST_NAME}
	ln BUGS ChangeLog.CVS README WISHLIST ${DIST_LOC}/${DIST_NAME}

	mkdir ${DIST_LOC}/${DIST_NAME}/demo-data
	ln demo-data/demo.gb ${DIST_LOC}/${DIST_NAME}/demo-data/demo.gb
	ln demo-data/demo.phylo ${DIST_LOC}/${DIST_NAME}/demo-data/demo.phylo

	mkdir ${DIST_LOC}/${DIST_NAME}/www
	ln www/index.html.in ${DIST_LOC}/${DIST_NAME}/www/index.html.in

dist: dist-dir
	@### TODO: it would be better if this did everything in a tmp
	@### location and then moved the result atomically into place.
	for dir in ${SOURCE_DIRS}; do                                  \
          (cd $${dir}; ${MAKE} dist-dir                                \
                       DISTDIR="../${DIST_LOC}/${DIST_NAME}/$${dir}"); \
        done
	(cd ${DIST_LOC}; tar zcvf ${DIST_NAME}.tar${GZIP_EXT} ${DIST_NAME})
	rm -rf ${DIST_LOC}/${DIST_NAME}

www: dist