LOCUS Mc.jannasc 2741 bp RNA RNA 19-DEC-1991 DEFINITION Methanococcus jannaschii str. JAL-1. REFERENCE 1 AUTHORS Rouviere,P., Mandelco,L. and Woese,C.R. TITLE Phylogenetic analysis of the archaea JOURNAL Syst. Appl. Microbiol. 15, 363-371 (1992) COMMENT Organism information Culture collection: DSM 2661 Sequence information (bases 1 to 2741) Corresponding GenBank entry: M59126 (Release 77.0) Source of sequence: CR Woese lab Sequence information (bases 1 to 1437) BASE COUNT 289 a 411 c 496 g 223 t 1322 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AU UCCGGUU-GA U-CCUGNNGG 61 AGGCC-ACU- GC-UAUCGGG GU-CC-GACU AAGCCAUGCG AGU-CAAGGG ---------- 121 ---------- ---------- ---------- ---------- ----GCUCCC ---------- 181 ---------U UCG------- ---------- --GGGAGC-- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---ACCGGCG C-ACG-GCUC 301 AGU---AAC- ACGUGGCUAA --CCU-AC-C CUCGGGUGG- --GGGAU-AA -CCUCG-GGA 361 AA-CUGAGG- CUAAUCCCCC AU-A---GGG GA--G-GAGG UC--UGGAAU ---GAUC--C 421 C-UC------ ---CCC-GAA A-GGC----- ---------- -GUAA----- ---------- 481 GCUG--CCC- --GANN--AU GGGGCUGCGG -CGG-AUUA- G-GUA-G--- UUGGUG-GGG 541 UAAC-GG-CC CACCAAGCCU ACGAUCCGUA CGGGCCCU-G -AGA-GGGG- ---------- 601 ---------G AGCCCGGAGA UGGACA-CUG A-GA-CACGG GUCCAG-GCC C-UACGGGGC 661 GC-AGC-A-G GCGCG-AAAC CUCCGCAAU- GCGC-GAAA- GCGCGACGGG -GGGACCCCG 721 AG-UGC-C-- ---------- ---------- ---------- --CACGC--C CU--GCG--U 781 GGGCUUUU-C C-GGAG-U-- ---------- ---------- ---GU-AAAC A--------- 841 ---------- --------G- CUC-C-GGG- AAUAAGG-GC UGGGCAAGUC CG-GUGCCAG 901 CAGCCGCGGU AAU-ACCGG- CGGCCC-AAG UGGUGGCC-A CUGUUAUUGG GCCUAAAGCG 961 UCCGUAGCCG -GCCC-NGUA AG-UCUC-UG CUU-AAAUC- CUGCGG-CUC AA-CCGCAG- 1021 GGC-U-GC-A GAGA-UAC-U GCCN-NNN-U U-GGNAC--- --CGGGAGAG GCCNGGGGUA 1081 CCCCAGGGGU AGCG-GUGAA A-UGCGUUGA U-CCCUGGGG G-ACC-A-CC UG--U-G-GC 1141 GAAGGCGC-- CCGGCUG--- ---GAACGGG UCCGACGGUG AGG-GACGAA G-GC-CAGGG 1201 -GAGCAAACC GG-AUUAGAU AC-CCGGGUA G-UCCUG-GC UGUAAACUCU GCGGA-CUAG 1261 GUGUCGCGUC GGC---UUCG G--------- ---------- ---------- --GCNGACGC 1321 GGUGCCGAA- GGGAAGCCGU -UAAGUCCGC CGCCUG-GGG AGUACGGUC- GCAA-GACU- 1381 GAAACUU-AA A-GGAAUUG- GCGGGGG-AG C--ACUA--C A-ACGGGUGG NNAC-CGCGG 1441 U-UUAAUUGG -AUUCAACGC CGGGCA-UCU UA-CCAGGGG ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- -CGACGGC-A GGAUGAAGGC CAGGUUGACG 1681 ACCUUGCC-A GA-CGCGCCG AGAGGUGGUG CAUGGCCGUC GUCA-GCU-- CGUACC-GUG 1741 AGGCGU-CCU G-UUAAGU-C AGGUAAC-GA GCGAGACCCG UG-CC--CCA UG--UUGC-U 1801 AC-CUCCUCC --G------- ---------- ----NCCG-- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- GGAG-GAGNG -CACU-C-A- UGG-GGNAC- 2221 CGNCGGC-GC -UAA-GCCG- -GAGGAAGG- UGCGG-GCAA CGAC--AGGU CCGCAU-GCC 2281 -CCGAAUC-C C-CU-GGGCU ACACGCGGGC UACAAUGG-C CGGGA--C-A AUGGGA-C-G 2341 C-GA-CCCCG -AAAGGGG-- GA-GCGAA-U CCCC-U-AAA CCGG-GUC-G UAGUCCGGAU 2401 CGAGGGCUGU AACUCGCCCU CGUGAAGCCG GAAU-CCGUA GUAAUCGCGC C-UC-ACC-A 2461 U-GGCGCGGU GAAUGCGUCC CUGCUCCUUG CACACACCGC CCGUCACG-- ---CCACCCG 2521 A-GUUGAGCC CAAGU-GA-G -GCCC-U-G- U-CC------ ---------- ---------- 2581 ---------- ---GCAA--- ---------- ---------- ---------- --------GG 2641 -GCAGGGU-C GAACUUG... .......... .......... ....GUAACA AG........ 2701 ....GAACCU G......GAU CACCUCC~~~ ~~~~~~~~~~ ~~~ // LOCUS Mc.igneus 2741 bp RNA RNA 19-DEC-1991 DEFINITION Methanococcus igneus str. Kol 5. REFERENCE 1 AUTHORS Burggraf,S., Fricke,H., Neuner,A., Kristjansson,J., Rouviere TITLE Methanococcus igneus sp. nov. a novel hyperthermophilic JOURNAL in press COMMENT Organism information Culture collection: DSM 5666 Sequence information (bases 1 to 2741) Corresponding GenBank entry: M59125 (Release 77.0) auth line 2:,P., Mandelco,L., Woese,C.R. and Stetter,K.O. title line 2:methanogen from a shallow submarine hydrothermal system. Source of sequence: CR Woese lab BASE COUNT 277 a 370 c 459 g 221 t 1414 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~NU UCCGGUU-GA U-CCCGCCGG 61 AGGCC-ACU- GC-UAUUGGG GU-CC-GACU AAGCCAUGCG AGU-CG-AUG ---------- 121 ---------- ---------- ---------- ---------- -------GGC ---------- 181 ---------C UC-------- ---------- --GUNC---- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---NAUGGCG G-ACG-GCUC 301 AGU---AAC- ACGUGGCUAA --CNU-AC-C NUCGGGUGG- --GGGAU-AA -CCUCG-GGA 361 AA-CUGAGG- AUAAUCCNCC AU-A---GGG GA--A-GAGG UC--UGGAAU ---UAUC--C 421 U-UC------ ---CCC-NAA A-GC------ ---------- -AUAU----- ---------- 481 -NCG--CCC- --GANN--AU GGGGCUGCGG -CCG-AUUA- G-GUA-G--- UUGGUG-GGG 541 UAAC-GG-CC CACNAAGCCU NCGAUCGGUA CGGGCCCU-G -AGA-GGGG- ---------- 601 ---------G AGCCNGGAGA UGGGGA-CUG A-GA-CACGG CCCNAG-GCC C-UACGGGGC 661 GC-AGC-A-G GCGCG-AAAC CUCCGCAAU- GCGC-GAAA- GCGCGACGGG -GGNACCCCA 721 AG-UGC-C-- ---------- ---------- ---------- --CACGC--A CU--GCG--U 781 GGNCUUUU-C C-GGAG-U-- ---------- ---------- ---GU-AAAC A--------- 841 ---------- --------G- CUC-C-GGG- AAUAAGG-GC UGGGCAAGUC CG-GUGCCAG 901 CAGCCGCGGU AAU-ACCGG- CAGCNC-GAG UGGUGGCN-A CUUUUAUUGG GCCUAAAGCG 961 UCCGUAGCCG -GCCC-AGUA AG-UCCC-UG CUU-AAAUC- CUACGG-CUU AA-CCGUAG- 1021 NAC-UNGC-A GGNA-UAC-U GCUG-GNN-U U-GGGAC--- --CGGGAGAG GGNNGGGGUA 1081 CUCCGGGGGU AGCG-GUGAA A-UGUGUUGA U-CCCCNNNG G-ACC-A-CC UA--U-N-GC 1141 GAAGGCAC-- CCGCCUG--- ---GAACGGG UCCGACGGUG AGG-GACNAA A-GC-CGGGG 1201 -GAGCGAACC GN-AUUAGAU AC-CCGGGUA G-UCCCG-GC CGUAAACGCU GCGGA-CUAG 1261 GUGUCGGGUA GGC---CUCG U--------- ---------- ---------- --GCCUACCC 1321 GGUGCCNAA- GGGAAGCCGU -UAAGUCCGC CGCCUG-GGG AGUACGGUC- GCAA-GACU- 1381 GAAACUU-AA A-GGAAUUG- GNNNNGG-AG C--ACUA--C A-ANGGGNGG ANC....... 1441 .......... .....AACGC UGGNCA-UCU UA-CNAGGGG ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- -CGACGGC-A NGAUGAAGGC CAGGUUGACG 1681 ACCUUGCC-A GA-CGAGCCG AGAGGUGGUG CAUGGCCGUC GUCA-GCU-- CGUACC-GUG 1741 AGGCGU-CCU G-UUAAGU-C AGGUAAC-GA GCGAGACCCG CG-CC--NNA UG--UUGC-C 1801 AU-CCUCNNN ---------- ---------- ----UCCG-- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- GGGG-GNGNG -CACU-C-A- UGG-GNNAC- 2221 CGNUGGC-GC -UAA-GCUA- -GAGGAAGG- AGCGG-GNAA CGAC--AGGU CNGCAU-GCC 2281 -CCGANUC-C C-CU-GGGCU ACACGCGGGC UACAAUGG-C UGGGA--C-A AUGGGA-N-G 2341 C-GA-CCCCG -AAAGGGG-- NA-GCGAA-U CCCC-U-AAA CCCA-GCU-G UAGUUCGGAU 2401 CGUGGGCUGU AACUCGCCCA CGUGAAGCUG GAAU-CCGUA GUAAUCGNGC C-UC-AUC-A 2461 U-GGCGCGGU GAAUGCGUCC CUGCUCCUUG CACACACCGC CCGUCACG-- ---CCACCCG 2521 A-GUUGGGUC UAGGU-GA-G -GCCC-U-G- G-CC------ ---------- ---------- 2581 ---------- ---UCU---- ---------- ---------- ---------- --------GG 2641 -CUGGGGY-C GAACCNAGGC C......... .......... .......... .......... 2701 .......... .......... .......... ....~~~~~~ ~~~ // LOCUS Mc.thlitho 2741 bp RNA RNA 19-DEC-1991 DEFINITION Methanococcus thermolithotrophicus str. SN-1. REFERENCE 1 AUTHORS Rouviere,P., Mandelco,L. and Woese,C.R. TITLE Phylogenetic analysis of the archaea JOURNAL Syst. Appl. Microbiol. 15, 363-371 (1993) COMMENT Organism information Culture collection: DSM 2095 Sequence information (bases 1 to 2741) Corresponding GenBank entry: M59128 (Release 77.0) Source of sequence: CR Woese lab Sequence information (bases 1 to 1433) BASE COUNT 321 a 367 c 468 g 271 t 1314 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AU UCCGGUU-GA U-CCCGCCGG 61 AGGUC-ACU- GC-UAUUGGG GU-UC-GACU AAGCCAUGCG AGU-CU-AUG ---------- 121 ---------- ---------- ---------- ---------- -------GAC ---------- 181 ---------U UCG------- ---------- --GUC----- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---CAUGGCG G-ACG-GCUC 301 AGU---AAC- ACGUGGCUAA --CCU-AC-C CUCGGGUGG- --GGGAU-AA -CCUCG-GGA 361 AA-CUGAGG- AUAAUACCCC AU-A---GGA GA--A-GAGG UC--UGGAAU ---GAUC--C 421 U-UC------ ---UCU-GAA A-AC------ ---------- -AUAU----- ---------- 481 -GUG--CCC- --GAGN--AU GGGGCUGCGU -CUG-AUUA- G-GUA-G--- UUGGUG-GGG 541 UAAC-GG-CC CACCAAGCCU ACGAUCAGUA CGGGCCUU-G -AGA-GAGG- ---------- 601 ---------C AGCCCGGAGA UGGGGA-CUG A-GA-CACGG CCCCAG-GCC C-UACGGGGC 661 GC-AGC-A-G GCGCG-AAAC CUCCGCAAU- GCAC-GAAA- GUGCGACGGG -GGGACCCCA 721 AG-UGC-U-- ---------- ---------- ---------- --UACGC--A CU--GCG--U 781 AGGCUUUU-C U-AAAG-U-- ---------- ---------- ---GU-AAAA A--------- 841 ---------- --------G- CUU-U-AGG- AAUAAGG-GC UGGGCAAGUC CG-GUGCCAG 901 CAGCCGCGGU AAC-ACCGG- CGGCCC-GAG UGGUGACC-A CUUUUAUUGG GCCUAAAGCG 961 UCCGUAGCCG -GUCC-AGUA AG-UCCC-UG UUU-AAAUC- CUACGG-CUU AA-CCGUAG- 1021 GNC-UGGC-A GGGA-UAC-U GCUN-GAC-U U-GGGAC--- --CGGGAGAG GGCGAGGGUA 1081 CUUCAGGGGU AGCG-GUGAA A-UGUGUUGA U-CCCUGGAG G-ACC-A-CC UA--U-G-GC 1141 GAAGGCAC-- UCGCCUG--- ---GAACGGG UCCGACGGUG AGG-GACNAA A-GC-CAGGG 1201 -GCGCGAACC GG-AUUAGAU AC-CCGGGUA G-UCCUG-GC NGUAAACUCU GCGGA-CUAG 1261 GUGUUAGGUA GGC---CCCG U--------- ---------- ---------- --GCCUAUCU 1321 AGUGCCGAA- GGGAAGCCGU -UAAGUCCGC CGCCUG-GGG AGUACGGUC- GCAA-GACU- 1381 GAAACUU-AA A-GGAAUUG- GCGGGGG-AG C--ACUA--C A-ACGGGUGG AGCC-UGCGG 1441 U-UUAAUUGG -AUUCAACGC CGGGCA-UCU CA-CCAGGGG ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- -CGACAGC-A UGAUGACGGC CAGGUUGACG 1681 ACCUUGCC-U GA-AGCGCUG AGAGGUGGUG CAUGGCCAUC GUCA-GCU-- CGUACC-GCG 1741 AGGCGU-CCU G-UUAAGU-C AGGUAAC-GA GCGAGACCCG UG-CC--CUA UG--UUGC-C 1801 AC-UUCUUCC ---------- ---------- ----UCCG-- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- GGAA-GAAAG -CACU-C-A- UAG-GGAAN- 2221 CGCUGGC-GC -UAA-GCCA- -GAGGAAGG- AGCGG-GCAA CGAU--AGGU CCGCAU-GCC 2281 -CCGAAUC-C C-CU-GGGCU ACACGCGGGC UACAAUGG-U UGGGA--C-A AUGGGA-U-G 2341 C-GA-CCCCG -AAAGGGG-- AA-GCUAA-U CUCC-U-AAA CCCA-GCC-G UAGUUCGGAU 2401 CGUGGGCUGU AACUCGCCCA CGUGAAGCUG GAAU-CCGUA GUAAUCGCAG U-UC-AUA-A 2461 U-ACUGCGGU GAAUGUGUCC CUGCUCCUUG CACACACCGC CCGUCACA-- ---CCACCCG 2521 A-GUUGGGUU GAGGU-GA-G -GCUU-U-G- G-CC------ ---------- ---------- 2581 ---------- ---UUU---- ---------- ---------- ---------- --------GG 2641 -CUAAGGU-C GAACCUGGGC UCAG-CG-AG G-GGGG.... ....GUAACA AG........ 2701 ....GAACCU G......... .......... ....~~~~~~ ~~~ // LOCUS Mc.aeolicu 2741 bp RNA RNA 11-APR-1992 DEFINITION "Methanococcus aeolicus" str. A. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information COMMENT Source of sequence: CR Woese lab BASE COUNT 328 a 346 c 445 g 276 t 1346 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~NU UCCGGUU-GA U-CCCGCCGG 61 AGGCU-ACU- GC-UAUUGGG AU-UC-GACU AAGCCAUGCG AGU-CU-AUG ---------- 121 ---------- ---------- ---------- ---------- -------GAC ---------- 181 ---------U UCG------- ---------- --GUC----- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---CAUGGCG G-ACG-GCUC 301 AGU---AAC- ACGUGGCUAA --CCU-AC-C CUCAGGUGG- --GGCAU-AA -CCUCG-GGA 361 AA-CUGAGG- AUAAUACCCC AU-A---GGA AA--A-GAGG UU--UGGAAU ---AAUC--C 421 U-UU------ ---UCU-GAA A-GG------ ---------- -AUAU----- ---------- 481 -CCG--CCU- --GAGN--NU GGGGCUGCGU -CCG-AUUA- G-GUA-G--- UUGGUG-GGG 541 UAAU-GG-CC CACNAAGCCU ACGAUCGGUA CGGGCCUU-G -AGA-GAGG- ---------- 601 ---------G AGCCCGGAGA UGGGGA-CUG A-GA-CACGG CCCNAG-GCC C-UACGGGGC 661 GC-AGC-A-G GCGCG-AAAC CUCCACAAU- GCAC-GAAA- GUGCGAUGGG -GGNAUCCCA 721 AG-UGC-C-- ---------- ---------- ---------- --UAUGC--A CA--GCA--U 781 AGGCNUUU-C C-CAAG-U-- ---------- ---------- ---CU-AAAC A--------- 841 ---------- --------A- CUU-G-GGG- AAUAAGG-GC UGGGCAAGUC CG-GUGCCAG 901 CAGCCGCGGU AAC-ACCGG- NGGCCC-GAG UGGUAGCN-A CUCUUAUUGG GCCUAAAGCG 961 UCCGUAGCCU -GUUC-AGUA AG-UCUC-UG UUU-AAAUC- CUACGG-CUU AA-CCGUAG- 1021 NNC-UGGC-A GAGA-UAC-U GCUN-NAC-U U-GGGAC--- --CGGGAGAG GAAGAGGGUA 1081 CUUCGGGNGU AGCG-GUGAA A-UGCGUUGA U-CCCUGAGG G-ACC-A-CC UA--U-G-GC 1141 GAAGGCAC-- UCUUCUG--- ---GAACGGG UCCGACGGUG AGG-GACNAA A-GC-CAGGG 1201 -GAGCGAACC GG-AUUAGAU AC-CCGGGUA G-UCCUG-GC CGUAAACUUU GCGAA-CUAG 1261 GUGUCAUCUG GAC---CUCG G--------- ---------- ---------- --GUCCAGGU 1321 GGUGCCGAA- GGGAAGCCAU -UAAGUUCGC CGCCUG-GGG AGUACGGUC- GCAA-GACU- 1381 GAAACUU-AA A-GGAAUUG- GCGGGGG-AG C--ACCA--C A-ACGGGUGG AGCC-UGCGG 1441 U-UUAAUUGG -NNNNAACGC CGGGNA-UCU CA-CCAGGAG ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- -CGACAGC-A UGAUGAAGGU CAGGUUGACG 1681 ACCUUACC-U GA-AGCGCUG AGAGGUGGNG CAUGGCCAUC GUCA-GCU-- CGUACC-GCG 1741 AGGCGU-CCU G-UUAAGU-C AGGUAAC-GA GCGAGACCCG UG-CC--CUA UG--UUGC-U 1801 AC-UUUCUUC ---------- ---------- ----UCCG-- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- GAGG-AAAGG -CACU-C-A- UAG-GGGAC- 2221 CGCUGGU-GU -UAA-ACCA- -GAGGAAGG- AGCGG-GNAA CGAU--AGGU CCGCAU-GCC 2281 -CCGAAUC-U C-CU-GGGCU ACACGCGGGC UACAAUGG-U UAGGA--C-A AUGGGA-A-G 2341 C-AA-CCCUG -AGAAGGG-- AA-GCAAA-U CUCU-U-AAA CCUA-AUC-G UAGUUCGGAU 2401 CGUGGGCUGU AACUCGCCCA CGUGAAGCUG GAAU-CCGUA GUAAUCGCAG U-UC-AUA-A 2461 U-ACUGCGGU GAAUGUGUCC CUGCUCCUUG CACACACCGC CCGUCACA-- ---CCACCCG 2521 A-GUUGGGUU GAGGU-GA-G -GCCC-U-A- G-CC------ ---------- ---------- 2581 ---------- ---UUU---- ---------- ---------- ---------- --------GG 2641 -CUAAGGU-C GAACCUNGGC UCAG-CA-AG G-GNGGU... .......... .......... 2701 .......... .......... .......... ....~~~~~~ ~~~ // LOCUS Mc.deltae 2741 bp RNA RNA 12-SEP-1992 DEFINITION Methanococcus deltae str. D. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information COMMENT Source of sequence: CR Woese lab BASE COUNT 317 a 339 c 447 g 273 t 1365 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~NU UCCGGUU-GA U-CCCGCCNN 61 AGGCC-ACU- GC-UAUUGGG AU-UC-GACU AAGCCAUGCG AGU-CU-AUG ---------- 121 ---------- ---------- ---------- ---------- --------GU ---------- 181 ---------U UCG------- ---------- --GC------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---CAUGGCG G-ACG-GCUC 301 AUU---AAC- ACGUGGUUAA --CAU-AC-C CUCAGGUGG- --GGGAU-AA -CCUUG-GGA 361 AA-CUGAGG- AUAAUNCCCC AU-A---GAA AA--A-GCAG UC--UGGAAC ---GAUU--C 421 U-UU------ ---UUC-GAA A-GC------ ---------- -AUAU----- ---------- 481 -GCG--CNU- --NANN--NU UGGACUGCGC -UCG-AUUA- G-GUA-G--- UUGGUG-GGG 541 UAAU-GG-CC CACNAAGCCU ACGAUCGGUA CGGGCCUU-G -AGA-GAGG- ---------- 601 ---------A AGCCCGGAGA UGGGGA-CUG A-GA-CACGG CCCNNG-GCC C-UACGGGNC 661 GC-AGC-A-G GCGCG-AAAC CUCCGCAAU- GCAC-GAAA- GUGCGACGGG -GGNAUCCCA 721 AG-UGC-U-- ---------- ---------- ---------- --CAUGC--A CA--GCA--U 781 GGGCUUUU-A U-CAAG-U-- ---------- ---------- ---GU-AAAC A--------- 841 ---------- --------G- CUU-G-AGG- AAUAAGG-GC UGGGCAAGUU CG-GUGCCAG 901 CAGCCGCGGU AAC-ACCGA- CGGCCC-GAG UGGUGGNN-A CUUUUAUUGG GCCUAAAGCG 961 UCCGUAGCCG -GUCC-AGUA AG-UCCU-UG UUU-AAAUC- CUGCGG-CUU AA-CCGCAG- 1021 NAC-UGGC-A GGGA-UAC-U GCUG-NNC-U U-GGGAC--- --CGGGAGAG GACAAGGGUA 1081 CUUCAGGGGU AGCG-GUGAA A-UGUGUUGA U-CCUUGAAG G-ACC-A-CC UA--U-G-GC 1141 GAAGGCAC-- UUGUCUG--- ---GAACGGG UCCGACGGUG AGG-GACGNA A-GC-CAGGG 1201 -GCGCGAACC GG-AUUAGAU AC-CCGGGUA G-UCCUG-GC CGUAAACUUU GCGAA-CUAG 1261 GUGUUAGGUG GGC---CCNG U--------- ---------- ---------- --GCCNAUCU 1321 AGUGCCGAA- GGGAAGCCGU -UAAGUUCGC CGCCUG-GGG AGUACGGUC- GCAA-GACU- 1381 GAAACUU-AA A-GGAAUUG- GCGGGGG-AG C--ACCA--C A-ACGGGUGG AGCC-UGCGG 1441 N-UUAAUUGG -ANGNAACGC CGGGNA-UCU CA-CCAGGAG ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- -CGACAGC-A UGAUGACGGC CAGGNUGACG 1681 ACCUUGCC-U GA-AGCGCUG AGAGGUGGNG CAUGGCCAUC GUCA-GCU-- CGUACC-GCG 1741 AGGCGU-CCU G-UUAAGU-C AGGUAAC-GA GCGAGACCCG UG-CC--CUA UG--UUGC-U 1801 AC-UUUUUCC ---------- ---------- ----UNCG-- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- GGAG-AAAGG -CACU-C-A- UAG-GGNAC- 2221 CGCUGGC-GC -UAA-GUCA- -GAGGAAGG- AGCGG-GNAA CGAU--AGGU CCGCAU-GCC 2281 -CCGAAUC-U C-CU-GGGCU ACACGCGGGC UACAAUGG-C UAGGA--C-A AUGGGC-C-G 2341 C-AA-CCCUG -AAAAGGG-- AC-GCAAA-U CUCC-U-AAA CCUA-GUC-G UAGUUCGGAU 2401 CGUGGGCUGU AACUCGCCCA CGUGAAGCUG GAAU-CCGUA GUAAUCGCAG U-UC-AUA-A 2461 U-ACUGCGGU GAAUNUGUCC CUGCUNNNUG CACACACNGC CNNNNACA-- ---CCACCCG 2521 A-GUUGGGUU GAAGU-GA-G -GCCU-U-G- G-CC------ ---------- ---------- 2581 ---------- ---UUU---- ---------- ---------- ---------- --------GG 2641 -CUAGGGU-C GAACUUGGGC UCAG-CG-AG G-GGGG.... .......... .......... 2701 .......... .......... .......... ....~~~~~~ ~~~ // LOCUS Mc.maripal 2741 bp RNA RNA 14-AUG-1992 DEFINITION Methanococcus maripaludis str. JJ. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information COMMENT Organism information Culture collection: ATCC 43000; DSM 2067 BASE COUNT 315 a 338 c 437 g 271 t 1380 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~NU UCCGGUU-GA U-CCCGCCGG 61 AGGCC-ACU- GC-UAUUGGG AU-UC-GACU AAGCCAUGCG AGU-CU-AUG ---------- 121 ---------- ---------- ---------- ---------- --------GU ---------- 181 ---------U UCG------- ---------- --GC------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---CAUGGCG G-ACG-GCUC 301 AUU---AAC- NCGUGGUUAA --CAU-AC-C CNCAGGUGG- --GGGAU-AA -CCUUG-GGA 361 AA-CUGAGG- AUAAUACCCC AU-A---GAA AA--A-GCAG UC--UGGAAC ---GAUU--C 421 U-UU------ ---UUC-GAA A-GC------ ---------- -AUAU----- ---------- 481 -GCG--CCU- --NANN--NU UGGACUGCGC -UCG-AUUA- G-GUA-G--- UUGGUG-GGG 541 UAAU-GG-CC CACNAAGCCU NCGAUCGGUA CGGGCCUU-G -AGA-GAGG- ---------- 601 ---------A AGCCCGGAGA UGGGGA-CUG A-GA-CACGG CCCNAG-GCC C-UACGGGGC 661 GC-AGC-A-G GCGCG-AAAC CUCCGCAAU- GCAC-GAAA- GUGCGACGGG -GGNAUCCCA 721 AG-UGC-U-- ---------- ---------- ---------- --CAUGC--A CA--GCA--U 781 GGGCUUUU-A U-CAAG-U-- ---------- ---------- ---GU-AAAC A--------- 841 ---------- --------G- CUU-G-AGG- AAUAAGG-GC UGGGCAAGUU CG-GUGCCAG 901 CAGCCGCGGU AAC-ACCGA- CGGCCC-GAG UGGUGGNN-N CUUUUAUUGG GCCUAAAGCG 961 UCCGUAGCCG -GUCC-AGUA AG-UCCU-UG UUU-AAAUC- CUGCGG-CUU AA-CCGCAG- 1021 NNC-UGGC-A GGGA-UAC-U GCUG-NNC-N U-GAGAC--- --CGGGAGAG GACAAGGGUA 1081 CUUCAGGGGU AGCG-GUGAA A-UGUGUUGA U-CCUUGAAG G-ACC-A-CC UA--U-G-GC 1141 GAAGGCAC-- UUGUCUG--- ---GAACGGG UCCGACGGUG AGG-GACNAA A-GC-CAGGG 1201 -GCGCGAACC GG-AUUAGAU AC-CCGGGUA G-UCCUG-GC CGUAAACUUU GCGAA-CUAG 1261 GUGUUAGGUG GGC---CCNG U--------- ---------- ---------- --GCCCAUCU 1321 AGUGCCGAA- GGGAAGCCGU -UAAGUUCGC CGCCUG-GGG AGUACGGUC- GCAA-GACU- 1381 GAAACUU-AA A-GGAAUUG- GCGGGGG-AG C--ACCA--C A-ACGGGUGG .......... 1441 U-UUAAUU.. ....NAACGC CGGGNA-UCU CA-CCAGGAG ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- -CGACAGC-A UGAUGACGGC CAGGNUGACG 1681 ACCUUGCC-U GA-AGCGCUG AGAGGUGGNG CAUGGCCAUC GUCA-GCU-- CGUACC-GCG 1741 AGGCGU-CCU G-UUAAGU-C AGGUAAC-GA GCGAGACCCG UG-CC--CUA UG--UUGC-U 1801 AC-UUUUUCC ---------- ---------- ----UNAG-- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- GGAG-AAAGG -CACU-C-A- UAG-GGNAC- 2221 CGCUGGC-GC -UAA-GUNA- -GAGGANGG- AGCGG-NNAA CGAU--AGGU CCGCAU-GCC 2281 -CCGAAUC-U C-CU-GGGCU ACACGCGGGC UACAAUGG-C UAGGA--C-A AUGGGC-C-G 2341 C-AA-CCCUG -AAAAGGG-- AC-GCAAA-U CUCC-U-AAA CCUA-GUC-G UAGUUCGGAU 2401 CGUGGGCUGU AACUCGCCCA CGUGAAGCUG GAAU-CCGUA GUAAUCGCAG U-UC-AUA-A 2461 U-ACUGCGGU GAAUGUGUCC CUNCUCNNUG CACACACCGN CNNNCACA-- ---CCACCCG 2521 A-GUUGGGUU GAAGU-GA-G -GCCU-U-G- G-CC------ ---------- ---------- 2581 ---------- ---UUU---- ---------- ---------- ---------- --------GG 2641 -CUAGGGU-C GAACUUGGGC UCAG-CG-AG G-G....... .......... .......... 2701 .......... .......... .......... ....~~~~~~ ~~~ // LOCUS Mc.voltae 2741 bp RNA RNA 19-DEC-1991 DEFINITION Methanococcus voltae str. PS. REFERENCE 1 AUTHORS Rouviere,P., Mandelco,L. and Woese,C.R. TITLE Phylogenetic analysis of the archaea JOURNAL Syst. Appl. Microbiol. 15, 363-371 (1993) COMMENT Organism information Culture collection: ATCC 33273; DSM 1537 Sequence information (bases 1 to 2741) Corresponding GenBank entry: M59290 (Release 77.0) Source of sequence: CR Woese lab Sequence information (bases 1 to 1441) BASE COUNT 340 a 345 c 446 g 301 t 1309 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AU UCCGGUU-GA U-CCCGCCGG 61 AGGUC-ACU- GC-UAUUGGG GU-UC-GACU AAGCCAUGCG AGU-CU-AUG ---------- 121 ---------- ---------- ---------- ---------- --------GC ---------- 181 ---------U UCG------- ---------- --GC------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---CAUGGCG G-ACG-GCUC 301 AUU---AUC- ACGUGGUUAA --CUU-AC-C CUCAAGCGG- --AGGAU-AA -CCUUG-GGA 361 AA-CUGAGG- AUAAUACUCC AU-A---GGA AA--A-AAGG UU--UGGAAU ---AAUC--U 421 U-UU------ ---UCU-GAA A-GC------ ---------- -AUAU----- ---------- 481 -GCG--CUU- --GAGN--AU AGGACUGCGC -UCG-AUUA- G-GUA-G--- UUGGUG-GGG 541 UAAU-GG-CC CACCAAGCCU ACGAUCGAUA CGGGCCUU-G -AGA-GAGG- ---------- 601 ---------G AGCCCGGAGA UGGGGA-CUG A-GA-CACGG CCCCAG-GCC C-UACGGGGC 661 GC-AGC-A-G GCGCG-AAAC CUCCGCAAU- GCAC-GAAA- GUGCGACGGG -GGGACCCCA 721 AG-UGC-C-- ---------- ---------- ---------- --UAUGU--A AC--UCA--U 781 AGGCUUUU-A G-UAAG-U-- ---------- ---------- ---GU-AAAU A--------- 841 ---------- --------G- CUU-A-AAG- AAUAAGG-GC UGGGCAAGUU CG-GUGCCAG 901 CAGCCGCGGU AAC-ACCGA- CGGCCC-AAG UGGUGACC-A CUCUUAUUGG GUCUAAAGCG 961 UCCGUAGCCG -GUUU-AGUA AG-UCCU-UG UUU-AAAUC- CUCUGG-CUU AA-CCAGAG- 1021 NAC-UGGC-A GGGA-UAC-U GCUA-GAC-U U-GGGAC--- --CGGGAGAG GACAAGGGUA 1081 CUCCAAGGGU AGCG-GUGGA A-UGUGUUGA U-CCUUGGAG G-ACC-A-CC UA--U-G-GC 1141 GAAGGCAC-- UUGUCUG--- ---GAACGGG UCCGACGGUG AGG-GACNNA A-GC-CAGGG 1201 -GCGCGAACC GG-AUUAGAU AC-CCGGGUA G-UCCUG-GC CGUAAACUUU GCGAA-CUAG 1261 GUGUUAGGUA GGC---UCUG U--------- ---------- ---------- --GCCUAUCU 1321 AGUGCCGAA- GGGAAGCCGU -UAAGUUCGC CACCUG-GGG AGUACGGUC- GCAA-GACU- 1381 GAAACUU-AA A-GGAAUUG- GCGGGGG-AG C--ACCA--C A-ACGGGUGG AGNC-UGCGG 1441 U-UUAAUUGG -AUUCAACGC CGGGCA-UCU CA-CCAGGAG ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- -CGACAGC-A UUAUGAUGAC CAGGUUGACG 1681 ACCUUGUC-U GA-AGCGCUG AGAGGUGGNG CAUGGCCAUC GUCA-GCU-- CGUACC-GCG 1741 AGGCGU-CCU G-UUAAGU-C AGGUAAC-GA GCGAGACCCG UG-CC--CUA UG--UUGC-U 1801 AG-UUUCUUC ---------- ---------- ----UCCG-- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- GAGG-NACAG -CACU-C-A- UAG-GAGAC- 2221 CGNUGGC-GC -UAA-GUCA- -GAGGAAGG- AGCGG-GCAA CGAU--AGGU CCGCAU-GCC 2281 -CCGAAUC-U C-CU-GGGCU ACACGCGGGC UACAAUGG-C UGGGA--C-A AUGGGA-U-G 2341 C-UA-CCCUG -AAAAGGG-- AC-GCAAA-U CUCC-U-AAA CCCU-GUC-G UAGUUCGGAU 2401 CGUGGGCUGU AACUCGCCCA CGUGAAGCUG GAAU-CCGUA GUAAUCGCAG U-UC-AUA-A 2461 U-ACUGCGGU GAAUGUGUCC CUGCUCCUUG CACACACCGC CCGUCACA-- ---CCAUCCG 2521 A-GUUGGGUU GAGGU-GA-G -GUUU-U-G- G-CC------ ---------- ---------- 2581 ---------- ---UUC---- ---------- ---------- ---------- --------GG 2641 -CUAAGAU-C GAACCUGGGU UCAG-CN-AG G-AGGG.... ....GUAACA AG........ 2701 ....GAACCU G......GAU CACCUCC~~~ ~~~~~~~~~~ ~~~ // LOCUS Mc.vanniel 2741 bp RNA RNA 15-SEP-1990 DEFINITION Methanococcus vannielii str. EY33. REFERENCE 1 AUTHORS Jarsch,M. and Boeck,A. TITLE Sequence of the 16S ribosomal RNA gene from Methanococcus JOURNAL Syst. Appl. Microbiol. 6, 54-59 (1985) COMMENT Sequence information (bases 1 to 2741) Corresponding GenBank entry: M36507 title line 2:vannielii: Evolutionary implications BASE COUNT 335 a 371 c 474 g 286 t 1275 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AU UCCGGUU-GA U-CCCGCCGG 61 AGGCU-ACU- GC-UAUUGGG GU-UC-GACU AAGCCAUGCG AGU-CU-AUG ---------- 121 ---------- ---------- ---------- ---------- --------GU ---------- 181 ---------U UCG------- ---------- --GC------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---CAUGGCG G-ACG-GCUC 301 AUU---AAC- ACGUGGUUAA --CUU-AA-C CUCAGGUGG- --AGCAU-AA -CCUUG-GGA 361 AA-CUGAGG- AUAAUUCUCC AU-A---AGA AA--A-GCAG UC--UGGAAC ---GAUU--C 421 U-UU------ ---UCU-GAA A-GC------ ---------- -AUAU----- ---------- 481 -GCG--CCC- --GAGG--AU AGGACUGCGC -UCG-AUUA- G-GUA-G--- UUGGUG-GGG 541 UAAU-GG-CC CACCAAGCCU ACGAUCGAUA CGGGCCUU-G -AGA-GAGG- ---------- 601 ---------G AGCCCGGAGA UGGGGA-CUG A-GA-CACGG CCCCAG-GCC C-UACGGGGC 661 GC-AGC-A-G GCGCG-AAAC CUCCGCAAU- GCAC-GAAA- GUGCGACGGG -GGGACCCCA 721 AG-UGC-U-- ---------- ---------- ---------- --CAUGC--A CA--GCA--U 781 GGGCUUUU-A U-CAAG-U-- ---------- ---------- ---GU-AAAC A--------- 841 ---------- --------G- CUU-G-AGG- AAUAAGG-GC UGGGCAAGUU CG-GUGCCAG 901 CAGCCGCGGU AAU-ACCGA- CGGCCC-GAG UGGUAGCC-A CUCUUAUUGG GCCUAAAGCG 961 UCCGUAGCCG -GUCC-AGUA AG-UCCC-UG UUU-AAAUU- CUCUGG-CUU AA-CCAGAG- 1021 GAC-UGGC-A GGGA-UAC-U GCUG-GAC-U U-GGGAC--- --CGGGAGAG GACAAGGGUA 1081 CUCCAGGGGU AGCG-GUGAA A-UGUGUUGA U-CCUUGGAG G-ACC-A-CC UA--U-G-GC 1141 GAAGGCAC-- UUGUCUG--- ---GAACGGG UCCGACGGUG AGG-GACGAA A-GC-CAGGG 1201 -GCGCGAACC GG-AUUAGAU AC-CCGGGUA G-UCCUG-GC CGUAAACUCU GCGAA-CUAG 1261 GUGUCACCUG GGC---CUCG A--------- ---------- ---------- --GCCCAGGU 1321 GGUGCCGAA- GGGAAGCCGU -UAAGUUCGC CGCCUG-GGG AGUACGGUC- GCAA-GACU- 1381 GAAACUU-AA A-GGAAUUG- GCGGGGG-AG C--ACCA--C A-ACGGGUGG AGCC-UGCGG 1441 U-UUAAUUGG -AUUCAACGC CGGGCA-UCU CA-CCAGGAG ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- -CGACAGC-A UGAUGACGGC CAGGUUGACG 1681 ACCUUGCC-U GA-AGCGCUG AGAGGUGGUG CAUGGCCAUC GUCA-GCU-- CGUACC-GCG 1741 AGGCGU-CCU G-UUAAGU-C AGGUAAC-GA GCGAGACCCG UG-CC--CUA UG--UUGC-G 1801 AC-UACUUUC ---------- ---------- ----UCCG-- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- GAAG-GUAAG -CACU-C-A- UAG-GGGAC- 2221 CGCUAGC-GC -UAA-GCUA- -GAGGAAGG- AGCGG-GCAA CGAU--AGGU CCGCAU-GCC 2281 -CCGAAUC-U C-CU-GGGCU ACACGCGGGC UACAAUGG-C UAGGA--C-A AUGGGC-U-G 2341 C-UA-CCCUG -AAAAGGG-- AC-GCGAA-U CUCC-G-AAA CCUA-GUC-G UAGUUCGGAU 2401 CGUGGGCUGU AACUCGCCCA CGUGAAGCUG GAAU-CCGUA GUAAUCGCAG U-UC-AUA-A 2461 U-ACUGCGGU GAAUGUGUCC CUGCUCCUUG CACACACCGC CCGUCACA-- ---CCACCCG 2521 A-GUUGGGUU CAGGU-GA-G -GCCU-U-G- G-CC------ ---------- ---------- 2581 ---------- ---UUU---- ---------- ---------- ---------- --------GG 2641 -CUAGGGU-C GAACCUGGGC UCAG-CG-AG G-GGGGUG-A AGUCGUAACA AGGUAGCCGU 2701 AGGGGAACCU GCGGCUGGAU CACCUCC~~~ ~~~~~~~~~~ ~~~ // LOCUS Mb.thfZ245 2741 bp RNA RNA 30-OCT-1992 DEFINITION Methanobacterium thermoformicicum str. Z-245. REFERENCE 1 AUTHORS Noelling,J., Hahn,D., Ludwig,W. and de Vos,W.M. TITLE Phylogenetic position of thermophilic Methanobacterium SP.: JOURNAL Syst. Appl. Microbiol. 16, 208-215 (1993) COMMENT Organism information Culture collection: DSM 3720; OCM 177 Sequence information (bases 1 to 2741) Corresponding GenBank entry: X68712 title line 2:evidence for a formate-utilizing ancestor BASE COUNT 308 a 339 c 433 g 250 t 1411 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... ...UGGAUAA --CCU-GC-C CUUGGGACC- --GGGAU-AA -CCCCG-GGA 361 AA-CUGGGG- AUAAACCUGG AU-A---GGU GA--U-GCUG CC--UGGAAU ---GGU--UC 421 U-UC------ ---ACC-GAA ACACC----- ---------- -UUCG----- ---------- 481 GGUG--CCC- --AAGG--AU GGGUCUGCGG -CCG-AUUA- G-GUU-G--- UUGGUA-GGG 541 UAAC-GG-CC UACCAAGCCG AUCAUCGGUA CGGGUUGU-G -AGA-GCAA- ---------- 601 ---------G AGCCCGGAGA UGGAAC-CUG A-GA-CAAGG UUCCAG-GCC C-UACGGGGC 661 GC-AGC-A-G GCGCG-AAAC CUCCGCAAU- GCAC-GCAA- GUGCGACNGG -GGAACCCCA 721 AG-UGC-C-- ---------- ---------- ---------- --ACUCU-UA AC--GGG--G 781 UGGCUUUU-C A-GAAG-U-- ---------- ---------- ---GU-AAAA A--------- 841 ---------- --------G- CUU-C-UGG- AAUAAGG-GC UGGGCAAGAC CG-GUGCCAG 901 CCGCCGCGGU AAC-ACCGG- CAGCUC-AAG UGGUAGCC-G CUUUUAUUGG GCCUAAAGCG 961 UCCGUAGCCG -GUCU-GAUA AG-UCUC-UG GUG-AAAUC- CCACAG-CUU AA-CUGUGG- 1021 GAAUUGCU-G GAGA-UAC-U AUCAUGAC-U C-GAGGU--- --CGGGAGAG GCUGGAGGUA 1081 CUCCCAGGGU AGGG-GUGAA A-UCCUGUAA U-CCUGGGAG G-ACC-A-CC UG--U-N-GC 1141 GAANGCGU-- CCAGCUG--- ---GAACGAA CCUGACNGUG AGG-GACGAA A-GC-CAGGG 1201 -GCGCGAACC GG-AUUAGAU AC-CCGGGUA G-UCCUG-GC CGUAAACGAU GUGGA-CUUG 1261 GUGUUGGGAU GGC---UUCG A--------- ---------- ---------- --GCUGCCCC 1321 AGUGCCGAA- GGGAAGCUGU -UAAGUCCAC CGCCUG-GGA AGUACGGCC- GCAA-GGCU- 1381 GAAACUU-AA A-GGAAUUG- GCGGGGG-AG C--ACCA--C A-ACGCGUGG AGCC-UGCGG 1441 U-UUAAUUGG -AUUCAACGC CGGACA-UCU CA-CCAGGGG ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- -CGACAGC-A GUAUGAUGGC CAGGUUGAUG 1681 ACCUUGCC-U GA-CGAGCUG AGAGGAGGUG CAUGGCCGCC GUCA-GCU-- CGUACC-GUG 1741 AGGCGU-CCU G-UUAAGU-C AGGCAAC-GA GCGAGACCCA CG-CC--CUU AG--UUAC-C 1801 AG-CGGAACC ---------- ---------- ----CUUAU- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------G GGUUGCCGGG -CACA-C-U- AAG-GGGAC- 2221 CGCCAGU-GA -UAA-ACUG- -GAGGAAGG- AGUGG-ACGA CGGU--AGGU CCGUAU-GCC 2281 -CCGAAUC-C C-CU-GGGCA ACACGCGGGC UACAAUGG-C CUGGA--C-A AUGGGU-U-C 2341 C-GA-CACCG -AAAGGUG-- GA-GGUAA-U CCCC-U-AAA CCAG-GUC-G UAGUUCGGAU 2401 CGAGGGCUGU AACCCGCCCU CGUGAAGCUG GAAU-GCGUA GUAAUCGCGU G-UC-ACU-A 2461 U-CGCGCGGU GAAUACGUCC CUGCUCCUUG CACACACCGC CCGUCACG-- ---CCACCCA 2521 A-AAAGGGCU UGGAU-GA-G -GCCA-C-A- A-CA------ ---------- ---------- 2581 ---------- ---UUC---- ---------- ---------- ---------- --------UG 2641 -UUGUGGU-C GAAUCUGGGU UCUU-UG-AG G-AGGGCG-A A......... .......... 2701 .......... .......... .......... ....~~~~~~ ~~~ // LOCUS Mb.thfCSM3 2741 bp RNA RNA 30-OCT-1992 DEFINITION Methanobacterium thermoformicicum str. CSM3. REFERENCE 1 AUTHORS Noelling,J., Hahn,D., Ludwig,W. and de Vos,W.M. TITLE Phylogenetic position of thermophilic Methanobacterium SP.: JOURNAL Syst. Appl. Microbiol. 16, 208-215 (1993) COMMENT Sequence information (bases 1 to 2741) Corresponding GenBank entry: X68716 title line 2:evidence for a formate-utilizing ancestor BASE COUNT 308 a 339 c 434 g 250 t 1410 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... ...UGGAUAA --CCU-GC-C CUUGGGACC- --GGGAU-AA -CCCCG-GGA 361 AA-CUGGGG- AUAAACCUGG AU-A---GGU GA--U-GCUG CC--UGGAAU ---GGU--UC 421 U-UC------ ---ACC-GAA ACACC----- ---------- -UUCG----- ---------- 481 GGUG--CCC- --AAGG--AU GGGUCUGCGG -CCG-AUUA- G-GUU-G--- UUGGUA-GGG 541 UAAC-GG-CC UACCAAGCCG AUCAUCGGUA CGGGUUGU-G -AGA-GCAA- ---------- 601 ---------G AGCCCGGAGA UGGAAC-CUG A-GA-CAAGG UUCCAG-GCC C-UACGGGGC 661 GC-AGC-A-G GCGCG-AAAC CUCCGCAAU- GCAC-GCAA- GUGCGACNGG -GGAACCCCA 721 AG-UGC-C-- ---------- ---------- ---------- --ACUCU-UA AC--GGG--G 781 UGGCUUUU-C A-GAAG-U-- ---------- ---------- ---GU-AAAA A--------- 841 ---------- --------G- CUU-C-UGG- AAUAAGG-GC UGGGCAAGAC CG-GUGCCAG 901 CCGCCGCGGU AAC-ACCGG- CAGCUC-AAG UGGUAGCC-G CUUUUAUUGG GCCUAAAGCG 961 UCCGUAGCCG -GUCU-GAUA AG-UCUC-UG GUG-AAAUC- CCACAG-CUU AA-CUGUGG- 1021 GAAUUGCU-G GAGA-UAC-U AUCAUGAC-U C-GAGGU--- --CGGGAGAG GCUGGAGGUA 1081 CUCCCAGGGU AGGG-GUGAA A-UCCUGUAA U-CCUGGGAG G-ACC-A-CC UG--U-G-GC 1141 GAANGCGU-- CCAGCUG--- ---GAACGAA CCUGACNGUG AGG-GACGAA A-GC-CAGGG 1201 -GCGCGAACC GG-AUUAGAU AC-CCGGGUA G-UCCUG-GC CGUAAACGAU GUGGA-CUUG 1261 GUGUUGGGAU GGC---UUCG A--------- ---------- ---------- --GCUGCCCC 1321 AGUGCCGAA- GGGAAGCUGU -UAAGUCCAC CGCCUG-GGA AGUACGGCC- GCAA-GGCU- 1381 GAAACUU-AA A-GGAAUUG- GCGGGGG-AG C--ACCA--C A-ACGCGUGG AGCC-UGCGG 1441 U-UUAAUUGG -AUUCAACGC CGGACA-UCU CA-CCAGGGG ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- -CGACAGC-A GUAUGAUGGC CAGGUUGAUG 1681 ACCUUGCC-U GA-CGAGCUG AGAGGAGGUG CAUGGCCGCC GUCA-GCU-- CGUACC-GUG 1741 AGGCGU-CCU G-UUAAGU-C AGGCAAC-GA GCGAGACCCA CG-CC--CUU AG--UUAC-C 1801 AG-CGGAACC ---------- ---------- ----CUUAU- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------G GGUUGCCGGG -CACA-C-U- AAG-GGGAC- 2221 CGCCAGU-GA -UAA-ACUG- -GAGGAAGG- AGUGG-ACGA CGGU--AGGU CCGUAU-GCC 2281 -CCGAAUC-C C-CU-GGGCA ACACGCGGGC UACAAUGG-C CUGGA--C-A AUGGGU-U-C 2341 C-GA-CACCG -AAAGGUG-- GA-GGUAA-U CCCC-U-AAA CCAG-GUC-G UAGUUCGGAU 2401 CGAGGGCUGU AACCCGCCCU CGUGAAGCUG GAAU-GCGUA GUAAUCGCGU G-UC-ACU-A 2461 U-CGCGCGGU GAAUACGUCC CUGCUCCUUG CACACACCGC CCGUCACG-- ---CCACCCA 2521 A-AAAGGGCU UGGAU-GA-G -GCCA-C-A- A-CA------ ---------- ---------- 2581 ---------- ---UUC---- ---------- ---------- ---------- --------UG 2641 -UUGUGGU-C GAAUCUGGGU UCUU-UG-AG G-AGGGCG-A A......... .......... 2701 .......... .......... .......... ....~~~~~~ ~~~ // LOCUS Mb.thfoFF1 2741 bp RNA RNA 30-OCT-1992 DEFINITION Methanobacterium thermoformicicum str. FF1. REFERENCE 1 AUTHORS Noelling,J., Hahn,D., Ludwig,W. and de Vos,W.M. TITLE Phylogenetic position of thermophilic Methanobacterium SP.: JOURNAL Syst. Appl. Microbiol. 16, 208-215 (1993) COMMENT Sequence information (bases 1 to 2741) Corresponding GenBank entry: X68714 title line 2:evidence for a formate-utilizing ancestor BASE COUNT 307 a 338 c 434 g 250 t 1412 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... ...UGGAUAA --CCU-GC-C CUUGGGACC- --GGGAU-AA -CCCCG-GGA 361 AA-CUGGGG- AUAAACCUGG AU-A---GGU GA--U-GCUG CC--UGGAAU ---GGU--UC 421 U-UC------ ---ACC-GAA ACACC----- ---------- -UUCG----- ---------- 481 GGUG--CCC- --AAGG--AU GGGUCUGCGG -CCG-AUUA- G-GUU-G--- UUGGUA-GGG 541 UAAC-GG-CC UACCAAGCCG AUCAUCGGUA CGGGUUGU-G -AGA-GCAA- ---------- 601 ---------G AGCCCGGAGA UGGAAC-CUG A-GA-CAAGG UUCCAG-GCC C-UACGGGGC 661 GC-AGC-A-G GCGCG-AAAC CUCCGCAAU- GCAC-GCAA- GUGCGACNGG -GGAACCCCA 721 AG-UGC-C-- ---------- ---------- ---------- --ACUCU-UA AC--GGG--G 781 UGGCUUUU-C A-GAAG-U-- ---------- ---------- ---GU-AAAA A--------- 841 ---------- --------G- CUU-C-UGG- AAUAAGG-GC UGGGCAAGAC CG-GUGCCAG 901 CCGCCGCGGU AAC-ACCGG- CAGCUC-AAG UGGUAGCC-G CUUUUAUUGG GCCUAAAGCG 961 UCCGUAGCCG -GUCU-GAUA AG-UCUC-UG GUG-AAAUC- CCACAG-CUU AA-CUGUGG- 1021 GAAUUGCU-G GAGA-UAC-U AUCAUGAC-U C-GAGGU--- --CGGGAGAG GCUGGAGGUA 1081 CUCCCAGGGU AGGG-GUGAA A-UCCUGUAA U-CCUGGGAG G-ACC-A-CC UG--U-N-GC 1141 GAANGCGU-- CCAGCUG--- ---GAACGAA CCUGACGGUG AGG-GACGAA A-GC-CAGGG 1201 -GCGCGAACC GG-AUUAGAU AC-CCGGGUA G-UCCUG-GC CGUAAACGAU GUGGA-CUUG 1261 GUGUUGGGAU GGC---UUCG A--------- ---------- ---------- --GCUGCCCC 1321 AGUGCCGAA- GGGAAGCUGU -UAAGUCCAC CGCCUG-GGA AGUACGGCC- GCAA-GGCU- 1381 GAAACUU-AA A-GGAAUUG- GCGGGGG-AG C--ACCA--C A-ACGCGUGG AGCC-UGCGG 1441 U-UUAAUUGG -AUUCAACGC CGGACA-UCU CA-CCAGGGG ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- -CGACAGC-A GUAUGAUGGC CAGGUUGAUG 1681 ACCUUGCC-U GA-CGAGCUG AGAGGAGGUG CAUGGCCGCC GUCA-GCU-- CGUACC-GUG 1741 AGGCGU-CCU G-UUAAGU-C AGGCAAC-GA GCGAGACCCA CG-CC--CUU AG--UUAC-C 1801 AG-CGGAACC ---------- ---------- ----CUUAU- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------G GGUUGCCGGG -CACA-C-U- AAG-GGGAC- 2221 CGCCAGU-GA -UAA-ACUG- -GAGGAAGG- AGUGG-ACGA CGGU--AGGU CCGUAU-GCC 2281 -CCGAAUC-C C-CU-GGGCA ACACGCGGGC UACAAUGG-C CUGGA--C-A AUGGGU-U-C 2341 C-GA-CACCG -AAAGGUG-- GA-GGUAA-U CCCC-U-AAA CCAG-GUC-G UAGUUCGGAU 2401 CGAGGGCUGU AACCCGCCCU CGUGAAGCUG GAAU-GCGUA GUAAUCGCGU G-UC-ACU-A 2461 U-CGCGCGGU GAAUACGUCC CUGCUCCUUG CACACACCGC CNGUCACG-- ---CCACCCA 2521 A-AAAGGGCU UGGAU-GA-G -GCCA-C-A- A-CA------ ---------- ---------- 2581 ---------- ---UUC---- ---------- ---------- ---------- --------UG 2641 -UUGUGGU-C GAAUCUGGGU UCUU-UG-AG G-AGGGCG-A N......... .......... 2701 .......... .......... .......... ....~~~~~~ ~~~ // LOCUS Mb.tauDELH 2741 bp RNA RNA 30-OCT-1992 DEFINITION Methanobacterium thermoautotrophicum str. delta H. REFERENCE 1 AUTHORS Noelling,J., Hahn,D., Ludwig,W. and de Vos,W.M. TITLE Phylogenetic position of thermophilic Methanobacterium SP.: JOURNAL Syst. Appl. Microbiol. 16, 208-215 (1994) COMMENT Sequence information (bases 1 to 2741) Corresponding GenBank entry: X68720 title line 2:evidence for a formate-utilizing ancestor BASE COUNT 306 a 340 c 433 g 249 t 1413 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... ...UGGAUAA --CCU-GC-C CUUGGGACC- --GGGAU-AA -CCCCG-GGA 361 AA-CUGGGG- AUAAACCCGG AU-A---GGU GA--U-GCUG CC--UGGAAU ---GGU--UC 421 U-UC------ ---ACC-GAA ACACC----- ---------- -UUCG----- ---------- 481 GGUG--CCC- --AAGG--AU GGGUCUGCGG -CCG-AUUA- G-GUU-G--- UUGGUA-GGG 541 UAAC-GG-CC UACCAAGCCG AUCAUCGGUA CGGGUUGU-G -AGA-GCAA- ---------- 601 ---------G AGCCCGGAGA UGGAAC-CUG A-GA-CAAGG UUCCAG-GCC C-UACGGGGC 661 GC-AGC-A-G GCGCG-AAAC CUCCGCAAU- GCAC-GCAA- GUGCGACNGG -GGAACCCCA 721 AG-UGC-C-- ---------- ---------- ---------- --ACUCU-UA AC--GGG--G 781 UGGCUUUU-C A-GAAG-U-- ---------- ---------- ---GU-AAAA A--------- 841 ---------- --------G- CUU-C-UGG- AAUAAGG-GC UGGGCAAGAC CG-GUGCCAG 901 CCGCCGCGGU AAC-ACCGG- CAGCUC-AAG UGGUAGCC-G CUUUUAUUGG GCCUAAAGCG 961 UCCGUAGCCG -GUCU-GAUA AG-UCUC-UG GUG-AAAUC- CCACAG-CUU AA-CUGUGG- 1021 GAAUUGCU-G GAGA-UAC-U AUCAUGAC-U C-GAGGU--- --CGGGAGAG GCUGGAGGUA 1081 CUCCCAGGGU AGGG-GUGAA A-UCCUGUAA U-CCUGGGAG G-ACC-A-CC UG--U-N-GC 1141 GAANGCGU-- CCAGCUG--- ---GAACGAA CCUGACNGUG AGG-GACGAA A-GC-CAGGG 1201 -GCGCGAACC GG-AUUAGAU AC-CCGGGUA G-UCCUG-GC CGUAAACGAU GUGGA-CUUG 1261 GUGUUGGGAU GGC---UUCG A--------- ---------- ---------- --GCUGCCCC 1321 AGUGCCGAA- GGGAAGCUGU -UAAGUCCAC CGCCUG-GGA AGUACGGCC- GCAA-GGCU- 1381 GAAACUU-AA A-GGAAUUG- GCGGGGG-AG C--ACCA--C A-ACGCGUGG AGCC-UGCGG 1441 U-UUAAUUGG -AUUCAACGC CGGACA-UCU CA-CCAGGGG ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- -CGACAGC-A GUAUGAUGGC CAGGUUGAUG 1681 ACCUUGCC-U GA-CGAGCUG AGAGGAGGUG CAUGGCCGCC GUCA-GCU-- CGUACC-GUG 1741 AGGCGU-CCU G-UUAAGU-C AGGCAAC-GA GCGAGACCCA CG-CC--CUU AG--UUAC-C 1801 AG-CGGAACC ---------- ---------- ----CUUAU- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------G GGUUGCCGGG -CACA-C-U- AAG-GGGAC- 2221 CGCCAGU-GA -UAA-ACUG- -GAGGAAGG- AGUGG-ACGA CGGU--AGGU CCGUAU-GCC 2281 -CCGAAUC-C C-CU-GGGCA ACACGCGGGC UACAAUGG-C CUGGA--C-A AUGGGU-U-C 2341 C-GA-CACCG -AAAGGUG-- GA-GGUAA-U CCCC-U-AAA CCAG-GUC-G UAGUUCGGAU 2401 CGAGGGCUGU AACCCGCCCU CGUGAAGCUG GAAU-GCGUA GUAAUCGCGU G-UC-ACU-A 2461 U-CGCGCGGU GAAUACGUCC CUGCUCCUUG CACACACCGC CCGUCACG-- ---CCACCCA 2521 A-AAAGGGCU UGGAU-GA-G -GCCA-C-A- A-CA------ ---------- ---------- 2581 ---------- ---UUC---- ---------- ---------- ---------- --------UG 2641 -UUGUGGU-C GNAUCUGGGU UCUU-UG-AG G-AGGGCG-A N......... .......... 2701 .......... .......... .......... ....~~~~~~ ~~~ // LOCUS Mb.thfoFTF 2741 bp RNA RNA 30-OCT-1992 DEFINITION Methanobacterium thermoformicicum str. FTF. REFERENCE 1 AUTHORS Noelling,J., Hahn,D., Ludwig,W. and de Vos,W.M. TITLE Phylogenetic position of thermophilic Methanobacterium SP.: JOURNAL Syst. Appl. Microbiol. 16, 208-215 (1993) COMMENT Sequence information (bases 1 to 2741) Corresponding GenBank entry: X68713 title line 2:evidence for a formate-utilizing ancestor BASE COUNT 307 a 340 c 434 g 248 t 1412 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... ...UGGAUAA --CCU-GC-C CUUGGGACC- --GGGAU-AA -CCCCG-GGA 361 AA-CUGGGG- AUAAACCCGG AU-A---GGU GA--U-GCUG CC--UGGAAU ---GGU--UC 421 U-UC------ ---ACC-GAA ACACC----- ---------- -UUCG----- ---------- 481 GGUG--CCC- --AAGG--AU GGGUCUGCGG -CCG-AUUA- G-GUU-G--- UUGGUA-GGG 541 UAAC-GG-CC UACCAAGCCG AUCAUCGGUA CGGGUUGU-G -AGA-GCAA- ---------- 601 ---------G AGCCCGGAGA UGGAAC-CUG A-GA-CAAGG UUCCAG-GCC C-UACGGGGC 661 GC-AGC-A-G GCGCG-AAAC CUCCGCAAU- GCAC-GCAA- GUGCGACNGG -GGAACCCCA 721 AG-UGC-C-- ---------- ---------- ---------- --ACUCU-UA AC--GGG--G 781 UGGCUUUU-C A-GAAG-U-- ---------- ---------- ---GU-AAAA A--------- 841 ---------- --------G- CUU-C-UGG- AAUAAGG-GC UGGGCAAGAC CG-GUGCCAG 901 CCGCCGCGGU AAC-ACCGG- CAGCUC-AAG UGGUAGCC-G CUUUUAUUGG GCCUAAAGCG 961 UCCGUAGCCG -GUCU-GAUA AG-UCUC-UG GUG-AAAUC- CCACAG-CUU AA-CUGUGG- 1021 GAAUUGCU-G GAGA-UAC-U AUCAUGAC-U C-GAGGU--- --CGGGAGAG GCUGGAGGUA 1081 CUCCCAGGGU AGGG-GUGAA A-UCCUGUAA U-CCUGGGAG G-ACC-A-CC UG--U-G-GC 1141 GAANGCGU-- CCAGCUG--- ---GAACGAA CCUGACNGUG AGG-GACGAA A-GC-CAGGG 1201 -GCGCGAACC GG-AUUAGAU AC-CCGGGUA G-UCCUG-GC CGUAAACGAU GUGGA-CUUG 1261 GUGUUGGGAU GGC---UUCG A--------- ---------- ---------- --GCUGCCCC 1321 AGUGCCGAA- GGGAAGCUGU -UAAGUCCAC CGCCUG-GGA AGUACGGCC- GCAA-GGCU- 1381 GAAACUU-AA A-GGAAUUG- GCGGGGG-AG C--ACCA--C A-ACGCGUGG AGCC-UGCGG 1441 U-UUAAUUGG -AUUCAACGC CGGACA-UCU CA-CCAGGGG ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- -CGACAGC-A GUAUGAUGGC CAGGUUGAUG 1681 ACCUUGCC-U GA-CGAGCUG AGAGGAGGUG CAUGGCCGCC GUCA-GCU-- CGUACC-GUG 1741 AGGCGU-CCU G-UUAAGU-C AGGCAAC-GA GCGAGACCCA CG-CC--CUU AG--UUAC-C 1801 AG-CGGAACC ---------- ---------- ----CUUAU- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------G GGUUGCCGGG -CACA-C-U- AAG-GGGAC- 2221 CGCCAGU-GA -UAA-ACUG- -GAGGAAGG- AGUGG-ACGA CGGU--AGGU CCGUAU-GCC 2281 -CCGAAUC-C C-CU-GGGCA ACACGCGGGC UACAAUGG-C CUGGA--C-A AUGGGU-U-C 2341 C-GA-CACCG -AAAGGUG-- GA-GGUAA-U CCCC-U-AAA CCAG-GUC-G UAGUUCGGAU 2401 CGAGGGCUGU AACCCGCCCU CGUGAAGCUG GAAU-GCGUA GUAAUCGCGU G-UC-ACN-A 2461 U-CGCGCGGU GAAUACGUCC CUGCUCCUUG CACACACCGC CCGUCACG-- ---CCACCCA 2521 A-AAAGGGCU UGGAU-GA-G -GCCA-C-A- A-CA------ ---------- ---------- 2581 ---------- ---UUC---- ---------- ---------- ---------- --------UG 2641 -UUGUGGU-C GAAUCUGGGU UCUU-UG-AG G-AGGGCG-A N......... .......... 2701 .......... .......... .......... ....~~~~~~ ~~~ // LOCUS Mb.thfoFF3 2741 bp RNA RNA 30-OCT-1992 DEFINITION Methanobacterium thermoformicicum str. FF3. REFERENCE 1 AUTHORS Noelling,J., Hahn,D., Ludwig,W. and de Vos,W.M. TITLE Phylogenetic position of thermophilic Methanobacterium SP.: JOURNAL Syst. Appl. Microbiol. 16, 208-215 (1993) COMMENT Sequence information (bases 1 to 2741) Corresponding GenBank entry: X68715 title line 2:evidence for a formate-utilizing ancestor BASE COUNT 308 a 340 c 434 g 248 t 1411 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... ...UGGAUAA --CCU-GC-C CUUGGGACC- --GGGAU-AA -CCCCG-GGA 361 AA-CUGGGG- AUAAACCCGG AU-A---GGU GA--U-GCUG CC--UGGAAU ---GGU--UC 421 U-UC------ ---ACC-GAA ACACC----- ---------- -UUCG----- ---------- 481 GGUG--CCC- --AAGG--AU GGGUCUGCGG -CCG-AUUA- G-GUU-G--- UUGGUA-GGG 541 UAAC-GG-CC UACCAAGCCG AUCAUCGGUA CGGGUUGU-G -AGA-GCAA- ---------- 601 ---------G AGCCCGGAGA UGGAAC-CUG A-GA-CAAGG UUCCAG-GCC C-UACGGGGC 661 GC-AGC-A-G GCGCG-AAAC CUCCGCAAU- GCAC-GCAA- GUGCGACNGG -GGAACCCCA 721 AG-UGC-C-- ---------- ---------- ---------- --ACUCU-UA AC--GGG--G 781 UGGCUUUU-C A-GAAG-U-- ---------- ---------- ---GU-AAAA A--------- 841 ---------- --------G- CUU-C-UGG- AAUAAGG-GC UGGGCAAGAC CG-GUGCCAG 901 CCGCCGCGGU AAC-ACCGG- CAGCUC-AAG UGGUAGCC-G CUUUUAUUGG GCCUAAAGCG 961 UCCGUAGCCG -GUCU-GAUA AG-UCUC-UG GUG-AAAUC- CCACAG-CUU AA-CUGUGG- 1021 GAAUUGCU-G GAGA-UAC-U AUCAUGAC-U C-GAGGU--- --CGGGAGAG GCUGGAGGUA 1081 CUCCCAGGGU AGGG-GUGAA A-UCCUGUAA U-CCUGGGAG G-ACC-A-CC UG--U-G-GC 1141 GAANGCGU-- CCAGCUG--- ---GAACGAA CCUGACNGUG AGG-GACGAA A-GC-CAGGG 1201 -GCGCGAACC GG-AUUAGAU AC-CCGGGUA G-UCCUG-GC CGUAAACGAU GUGGA-CUUG 1261 GUGUUGGGAU GGC---UUCG A--------- ---------- ---------- --GCUGCCCC 1321 AGUGCCGAA- GGGAAGCUGU -UAAGUCCAC CGCCUG-GGA AGUACGGCC- GCAA-GGCU- 1381 GAAACUU-AA A-GGAAUUG- GCGGGGG-AG C--ACCA--C A-ACGCGUGG AGCC-UGCGG 1441 U-UUAAUUGG -AUUCAACGC CGGACA-UCU CA-CCAGGGG ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- -CGACAGC-A GUAUGAUGGC CAGGUUGAUG 1681 ACCUUGCC-U GA-CGAGCUG AGAGGAGGUG CAUGGCCGCC GUCA-GCU-- CGUACC-GUG 1741 AGGCGU-CCU G-UUAAGU-C AGGCAAC-GA GCGAGACCCA CG-CC--CUU AG--UUAC-C 1801 AG-CGGAACC ---------- ---------- ----CUUAU- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------G GGUUGCCGGG -CACA-C-U- AAG-GGGAC- 2221 CGCCAGU-GA -UAA-ACUG- -GAGGAAGG- AGUGG-ACGA CGGU--AGGU CCGUAU-GCC 2281 -CCGAAUC-C C-CU-GGGCA ACACGCGGGC UACAAUGG-C CUGGA--C-A AUGGGU-U-C 2341 C-GA-CACCG -AAAGGUG-- GA-GGUAA-U CCCC-U-AAA CCAG-GUC-G UAGUUCGGAU 2401 CGAGGGCUGU AACCCGCCCU CGUGAAGCUG GAAU-GCGUA GUAAUCGCGU G-UC-ACN-A 2461 U-CGCGCGGU GAAUACGUCC CUGCUCCUUG CACACACCGC CCGUCACG-- ---CCACCCA 2521 A-AAAGGGCU UGGAU-GA-G -GCCA-C-A- A-CA------ ---------- ---------- 2581 ---------- ---UUC---- ---------- ---------- ---------- --------UG 2641 -UUGUGGU-C GAAUCUGGGU UCUU-UG-AG G-AGGGCG-A A......... .......... 2701 .......... .......... .......... ....~~~~~~ ~~~ // LOCUS Mb.tautotr 2741 bp RNA RNA 08-NOV-1991 DEFINITION Methanobacterium thermoautotrophicum str. Marburg. REFERENCE 1 AUTHORS Ostergaard,L., Larsen,N., Leffers,H., Kjems,J. and Garret,R. TITLE A Ribosomal RNA Operon and its Flanking Region from the JOURNAL Syst. Appl. Microbiol. 9, 199-209 (1987) COMMENT Sequence information (bases 1 to 2741) Corresponding GenBank entry: X15364 X05482 (Release 77.0) title line 2:Archaebacterium Methanobacterium thermoautotrophicum, Marburg title line 3: strain: transcription Signals, Structure and title line 4:Evolutionary Implications ref 2 auth:Leffers,H., Kjems,J., Ostergaard,L., Larsen,N. and Garrett,R.A. ref 2 title:Evolutionary Relationship Amongst Archaebacteria: ref 2 title line 2:A Comparative Study of 23 S Ribosomal ref 2 title line 3:RNAs of a Sulphur-dependent Extreme Thermophile, ref 2 title line 4:an Extreme Halophile and a Thermophilic Methanogen ref 2 jour:J. Mol. Biol. 195, 43-61 (1987) BASE COUNT 336 a 371 c 488 g 286 t 1260 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AG UCCGUUU-GA U-CCUGGCGG 61 AGGCU-ACU- GC-UAUUGGG GU-UC-GAUU AAGCCAUGCA AGU-CGAACG ---------- 121 ---------- ---------- ---------- ---------- -------AAC ---------- 181 --------CU UGU------- ---------- --GUU----- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---CGUGGCG A-ACG-GCUC 301 AGU---AAC- ACGUGGAUAA --CCU-GC-C CUUGGGACU- --GGGAU-AA -CCCCG-GGA 361 AA-CUGGGG- AUAAACCUGG AU-A---GGU GA--U-GCGG CC--UGGAAU ---GGU--GC 421 U-UC------ ---ACC-GAA ACACC----- ---------- -UUCGG---- ---------- 481 GGUG--CCC- --AAGG--AU GGGUCUGCGG -CCG-AUUA- G-GUA-G--- UUGGUA-GGG 541 UAAC-GG-CC UACCAAGCCC AUCAUCGGUA CGGGUUGU-G -AGA-GCAA- ---------- 601 ---------G AGCCCGGAGA UGGAAC-CUG A-GA-CAAGG UUCCAG-GCC C-UACGGGGC 661 GC-AGC-A-G GCGCG-AAAC CUCCGCAAU- GCAC-GCAA- GUGCGACGGG -GGAACCCCA 721 AG-UGC-C-- ---------- ---------- ---------- --ACUCU-UA AC--GGG--G 781 UGGCUUUU-C A-GAAG-U-- ---------- ---------- ---GU-AAAA A--------- 841 ---------- --------G- CUU-C-UGG- AAUAAGG-GC UGGGCAAGAC CG-GUGCCAG 901 CCGCCGCGGU AAC-ACCGG- CAGCUC-AAG UGGUAGCC-G CUUUUAUUGG GCCUAAAGCG 961 UCCGUAGCCG -GUCU-GAUA AG-UCUC-UG GUG-AAAUC- CCGCAG-CUU AA-CUGUGG- 1021 GAAUUGCU-G GAGA-UAC-U AUCAUGAC-U C-GAGGU--- --CGGGAGAG GCUGGAGGUA 1081 CUCCCAGGGU AGGG-GUGAA A-UCCUGUAA U-CCUGGGAG G-ACC-A-CC UG--U-G-GC 1141 GAAGGCGU-- CCAGCUG--- ---GAACGAA CCUGACGGUG AGG-GACGAA A-GC-UAGGG 1201 -GCGCGAACC GG-AUUAGAU AC-CCGGGUA G-UCCUG-GC CGUAAACGAU GUGGA-CUUG 1261 GUGUUGGGAU GGC---UUCG A--------- ---------- ---------- --GCUGCCCC 1321 AGUGCCGAA- GGGAAGCUGU -UAAGUCCAC CGCCUG-GGA AGUACGGCC- GCAA-GGCU- 1381 GAAACUU-AA A-GGAAUUG- GCGGGGG-AG C--ACCA--C A-ACGCGUGG AGCC-UGCGG 1441 U-UUAAUUGG -AUUCAACGC CGGACA-UCU CA-CCAGGGG ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- -CGACAGC-A GUAUGAUGGC CAGGUUGAUG 1681 ACCUUGCC-U GA-CGAGCUG AGAGGAGGUG CAUGGCCGCC GUCA-GCU-- CGUACC-GUG 1741 AGGCGU-CCU G-UUAAGU-C AGGCAAC-GA GCGAGACCCA CG-CC--CUU AG--UUAC-C 1801 AG-CGGGACC C--------- ---------- ----CUUG-- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------G GGUUGCCGGG -CACA-C-U- AAG-GGGAC- 2221 CGCCAGU-GA -UAA-ACUG- -GAGGAAGG- AGUGG-ACGA CGGU--AGGU CCGUAU-GCC 2281 -CCGAAUC-C C-CU-GGGCA ACACGCGGGC UACAAUGG-C CUGGA--C-A AUGGGU-U-C 2341 C-GA-CACUG -AAAGGUG-- GA-GGUAA-U CCCC-U-AAA CCAG-GUC-G UAGUUCGGAU 2401 CGAGGGCUGU AACUCGCCCU CGUGAAGCUG GAAU-GCGUA GUAAUCGCGU G-UC-AUU-A 2461 U-CGCGCGGU GAAUACGUCC CUGCUCCUUG CACACACCGC CCGUCACG-- ---CCACCCA 2521 A-AAAGGGCU UGGAU-GA-G -GCCA-C-A- G-UA------ ---------- ---------- 2581 ---------- ---UUU---- ---------- ---------- ---------- --------UG 2641 -CUGUGGU-C GAAUCUGGGU UCUU-UG-AG G-AGGGCG-A AGUCGUAACA AGGUAGCCGU 2701 AGGGGAACCU GCGGCUGGAU CACCUCCU~~ ~~~~~~~~~~ ~~~ // LOCUS Mb.thformi 2741 bp RNA RNA 20-OCT-1992 DEFINITION Methanobacterium thermoformicicum str. CB12. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information COMMENT Organism information Culture collection: ATCC 43574; DSM 3664; OCM 36 Source of sequence: CR Woese lab BASE COUNT 325 a 362 c 463 g 269 t 1322 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~NG UCCGUUU-GA U-CCUGGCGG 61 AGGCU-ACU- GC-UAUUGGG GU-UC-GAUU AAGCCAUGCA AGU-CGAACG ---------- 121 ---------- ---------- ---------- ---------- -----AGCAC ---------- 181 ---------C UCG------- ---------- --GUGCU--- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---CGUGGCG A-ACG-GCUC 301 AGU---AAC- ACGUGGAUAA --CCU-GC-C CUUGGGACC- --GGGAU-AA -CCCCG-GNA 361 AA-CUGGGG- AUAAACCCGG AU-A---GGU GA--A-GAUG CC--UGGAAU ---GGU--GC 421 U-UC------ ---ACC-NAA ACACC----- ---------- -UCCG----- ---------- 481 GGUG--CCC- --AAGN--AU GGGUCUGCGG -CCG-AUUA- G-GUA-G--- UUGGUA-GGG 541 UAAC-GG-CC UACCAAGCCC AUCAUCGGUA CGGGUUGU-G -AGA-GCAA- ---------- 601 ---------G AGCCCGGAGA UGGAAC-CUG A-GA-CAAGG UUCCAG-GCC C-UACGGGGC 661 GC-AGC-A-G GCGCG-AAAC CUCCGCAAU- GCAC-GCAA- GUGCGACGGG -GGAACCCCA 721 AG-UGC-C-- ---------- ---------- ---------- --ACUCU-UA AC--GGG--G 781 UGGCUUUU-C A-GAAG-U-- ---------- ---------- ---GU-AAAA A--------- 841 ---------- --------G- CUU-C-UGG- AAUAAGG-GC UGGGCAAGAC CG-GUGCCAG 901 CCGCCGCGGU AAC-ACCGG- CAGCUC-AAG UGGUAGCC-G CUUUUAUUGG GCCUAAAGCG 961 UCCGUAGCCG -GUCU-GAUA AG-UCUC-UG GUG-AAAUC- CCACAG-CUU AA-CUGUGG- 1021 NNAUUGCU-G GAGA-UAC-U AUCAUGAC-U C-GAGGU--- --CGGGAGAG GCUGGAGGUA 1081 CUCCCAGGGU AGGG-GUGAA A-UCCUGUAA U-CCUGGNNG G-ACC-A-CC UG--U-G-GC 1141 GAAGGCGU-- CCAGCUG--- ---GAACGAA CCUGACGGUG AGG-GACGNA A-GC-CAGGG 1201 -GCGCGAACC GG-AUUAGAU AC-CCGGGUA G-UCCUG-GC CGUAAACGAU GUGGA-CUUG 1261 GUGUUGGGAU GGC---UUCG A--------- ---------- ---------- --GCUGCCCC 1321 AGUGCCGAA- GGGAAGCUGU -UAAGUCCAC CGCCUG-GGN AGUACGGCC- GCAA-GGCU- 1381 GAAACUU-AA A-GGAAUUG- GCGGGGG-AG C--ACCA--C A-ACGCGUGG AGCC-UGCGG 1441 U-UUAAUUGG -ANNNAACGC CGGACA-UCU CA-CCAGGGG ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- -CGACAGC-A GUAUGAUGGC CAGGUUGAUG 1681 ACCUUGCU-U GA-CAAGCUG AGAGGAGGUG CAUGGCCGCC GUCA-GCU-- CGUACC-GUG 1741 AGGCGU-CCU G-UUAAGU-C AGGCAAC-GA GCGAGACCCA CG-CC--CUU AG--UUAC-C 1801 AG-CGGAACC ---------- ---------- ----CUUAU- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------G GGUUGCCGGG -CACA-C-U- AAG-GGGAC- 2221 CGCCAGU-GA -UAA-ACUG- -GAGGAAGG- AGUGG-ACGA CGGU--AGGU CNGUAU-GCC 2281 -CCGAAUC-C C-CU-GGGCA ACACGCGGGC UACAAUGG-C CUGGA--C-A AUGGGU-U-C 2341 C-GA-CACUG -AAAGGUG-- GA-GGUAA-U CCCC-U-AAA CCAG-GUC-G UAGUUCGGAU 2401 CGAGGGCUGU AACUCGCCCU CGUGAAGCUG GAAU-GCGUA GUAAUCGCGU G-UC-AUU-A 2461 U-CGCGCGGU GAAUACGUCC CUGCUCCUUG CACACACCGC CCGUCACG-- ---CCACCCA 2521 A-AAAGGGCU UGGAU-GA-G -GCCA-C-A- G-CA------ ---------- ---------- 2581 ---------- ---CCU---- ---------- ---------- ---------- --------UG 2641 -UUGUGGU-C GAAUCUGGGU UCUU-UG-AG G-AGGGC... .......... .......... 2701 .......... .......... .......... ....~~~~~~ ~~~ // LOCUS Mb.thfoHN4 2741 bp RNA RNA 30-OCT-1992 DEFINITION Methanobacterium thermoformicicum str. HN4. REFERENCE 1 AUTHORS Noelling,J., Hahn,D., Ludwig,W. and de Vos,W.M. TITLE Phylogenetic position of thermophilic Methanobacterium SP.: JOURNAL Syst. Appl. Microbiol. 16, 208-215 (1993) COMMENT Sequence information (bases 1 to 2741) Corresponding GenBank entry: X68719 title line 2:evidence for a formate-utilizing ancestor BASE COUNT 310 a 339 c 431 g 248 t 1413 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... ...UGGAUAA --CCU-GC-C CUUGGGACC- --GGGAU-AA -CCCCG-GGA 361 AA-CUGGGG- AUAAACCCGG AU-A---GGU GA--A-GAUG CC--UGGAAU ---GGU--GC 421 U-UC------ ---ACC-CAA ACACC----- ---------- -UCCG----- ---------- 481 GGUG--CCC- --AAGG--AU GGGUCUGCGG -CCG-AUUA- G-GUA-G--- UUGGUA-GGG 541 UAAC-GG-CC UACCAAGCCC AUCAUCGGUA CGGGUUGU-G -AGA-GCAA- ---------- 601 ---------G AGCCCGGAGA UGGAAC-CUG A-GA-CAAGG UUCCAG-GCC C-UACGGGGC 661 GC-AGC-A-G GCGCG-AAAC CUCCGCAAU- GCAC-GCAA- GUGCGACNGG -GGAACCCCA 721 AG-UGC-C-- ---------- ---------- ---------- --ACUCU-UA AC--GGG--G 781 UGGCUUUU-C A-GAAG-U-- ---------- ---------- ---GU-AAAA A--------- 841 ---------- --------G- CUU-C-UGG- AAUAAGG-GC UGGGCAAGAC CG-GUGCCAG 901 CCGCCGCGGU AAC-ACCGG- CAGCUC-AAG UGGUAGCC-G CUUUUAUUGG GCCUAAAGCG 961 UCCGUAGCCG -GUCU-GAUA AG-UCUC-UG GUG-AAAUC- CCACAG-CUU AA-CUGUGG- 1021 GAAUUGCU-G GAGA-UAC-U AUCAUGAC-U C-GAGGU--- --CGGGAGAG GCUGGAGGUA 1081 CUCCCAGGGU AGGG-GUGAA A-UCCUGUAA U-CCUGGGAG G-ACC-A-CC UG--U-N-GC 1141 GAANGCGU-- CCAGCUG--- ---GAACGAA CCUGACNGUG AGG-GACGAA A-GC-CAGGG 1201 -GCGCGAACC GG-AUUAGAU AC-CCGGGUA G-UCCUG-GC CGUAAACGAU GUGGA-CUUG 1261 GUGUUGGGAU GGC---UUCG A--------- ---------- ---------- --GCUGCCCC 1321 AGUGCCGAA- GGGAAGCUGU -UAAGUCCAC CGCCUG-GGA AGUACGGCC- GCAA-GGCU- 1381 GAAACUU-AA A-GGAAUUG- GCGGGGG-AG C--ACCA--C A-ACGCGUGG AGCC-UGCGG 1441 U-UUAAUUGG -AUUCAACGC CGGACA-UCU CA-CCAGGGG ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- -CGACAGC-A GUAUGAUGGC CAGGUUGAUG 1681 ACCUUGCU-U GA-CAAGCUG AGAGGAGGUG CAUGGCCGCC GUCA-GCU-- CGUACC-GUG 1741 AGGCGU-CCU G-UUAAGU-C AGGCAAC-GA GCGAGACCCA CG-CC--CUU AA--UUAC-C 1801 AG-CGGAACC ---------- ---------- ----CUUAU- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------G GGUUGCCGGG -CACA-C-U- AAG-GGGAC- 2221 CGCCAGU-GA -UAA-ACUG- -GAGGAAGG- AGUGG-ACGA CGGU--AGGU CCGUAU-GCC 2281 -CCGAAUC-C C-CU-GGGCA ACACGCGGGC UACAAUGG-C CUGGA--C-A AUGGGU-U-C 2341 C-GA-CACUG -AAAGGUG-- GA-GGUAA-U CCCC-U-AAA CCAG-GUC-G UAGUUCGGAU 2401 CGAGGGCUGU AACUCGCCCU CGUGAAGCUG GAAU-GCGUA GUAAUCGCGU G-UC-AUU-A 2461 U-CGCGCGGU GAAUACGUCC CUGCUCCUUG CACACACCGC CCGUCACG-- ---CCACCCA 2521 A-AAAGGGCU UGGAU-GA-G -GCCA-C-A- G-CA------ ---------- ---------- 2581 ---------- ---CCU---- ---------- ---------- ---------- --------UG 2641 -UUGUGGU-C GNAUCUGGGU UCUU-UG-AG G-AGGGCG-A N......... .......... 2701 .......... .......... .......... ....~~~~~~ ~~~ // LOCUS Mb.thfoSF4 2741 bp RNA RNA 30-OCT-1992 DEFINITION Methanobacterium thermoformicicum str. SF-4. REFERENCE 1 AUTHORS Noelling,J., Hahn,D., Ludwig,W. and de Vos,W.M. TITLE Phylogenetic position of thermophilic Methanobacterium SP.: JOURNAL Syst. Appl. Microbiol. 16, 208-215 (1993) COMMENT Sequence information (bases 1 to 2741) Corresponding GenBank entry: X68718 title line 2:evidence for a formate-utilizing ancestor BASE COUNT 309 a 338 c 431 g 247 t 1416 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... ...UGGAUAA --CCU-GC-C CUUGGGACC- --GGGAU-AA -CCCCG-GGA 361 AA-CUGGGG- AUAAACCCGG AU-A---GGU GA--A-GAUG CC--UGGAAU ---GGU--GC 421 U-UC------ ---ACC-CAA ACACC----- ---------- -UCCG----- ---------- 481 GGUG--CCC- --AAGG--AU GGGUCUGCGG -CCG-AUUA- G-GUA-G--- UUGGUA-GGG 541 UAAC-GG-CC UACCAAGCCC AUCAUCGGUA CGGGUUGU-G -AGA-GCAA- ---------- 601 ---------G AGCCCGGAGA UNGAAC-CUG A-GA-CAAGG UUCCAG-GCC C-UACGGGGC 661 GC-AGC-A-G GCGCG-AAAC CUCCGCAAU- GCAC-GCAA- GUGCGACNGG -GGAACCCCA 721 AG-UGC-C-- ---------- ---------- ---------- --ACUCU-UA AC--GGG--G 781 UGGCUUUU-C A-GAAG-U-- ---------- ---------- ---GU-AAAA A--------- 841 ---------- --------G- CUU-C-UGG- AAUAAGG-GC UGGGCAAGAC CG-GUGCCAG 901 CCGCCGCGGU AAC-ACCGG- CAGCUC-AAG UGGUAGCC-G CUUUUAUUGG GCCUAAAGCG 961 UCCGUAGCCG -GUCU-GAUA AG-UCUC-UG GUG-AAAUC- CCACAG-CUU AA-CUGUGG- 1021 GAAUUGCU-G GAGA-UAC-U AUCAUGAC-U C-GAGGU--- --CGGGAGAG GCUGGAGGUA 1081 CUCCCAGGGU AGGG-GUGAA A-UCCUGUAA U-CCUGGGAG G-ACC-A-CC UG--U-N-GC 1141 GAANGCGU-- CCAGCUG--- ---GAACGAA CCUGACNGUG AGG-GACGAA A-GC-CAGGG 1201 -GCGCGAACC GG-AUUAGAU AC-CCGGGUA G-UCCUG-GC CGUAAACGAU GUGGA-CUUG 1261 GUGUUGGGAU GGC---UUCG A--------- ---------- ---------- --GCUGCCCC 1321 AGUGCCGAA- GGGAAGCUGU -UAAGUCCAC CGCCUG-GGA AGUACGGCC- GCAA-GGCU- 1381 GAAACUU-AA A-GGAAUUG- GCGGGGG-AG C--ACCA--C A-ACGCGUGG AGCC-UGCGG 1441 U-UUAAUUGG -AUUCAACGC CGGACA-UCU CA-CCAGGGG ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- -CGACAGC-A GUAUGAUGGC CAGGUUGAUG 1681 ACCUUGCU-U GA-CAAGCUG AGAGGAGGUG CAUGGCCGCC GUCA-GCU-- CGUACC-GUG 1741 AGGCGU-CCU G-UUAAGU-C AGGCAAC-GA GCGAGACCCA CG-CC--CUU AG--UUAC-C 1801 AG-CGGAACC ---------- ---------- ----CUUAU- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------G GGUUGCCGGG -CACA-C-U- AAG-GGGAC- 2221 CGCCAGU-GA -UAA-ACUG- -GAGGAAGG- AGUGG-ACGA CGGU--AGGU CCGUAU-GCC 2281 -CCGAAUC-C C-CU-GGGCA ACACGCGGGC UACAAUGG-C CUGGA--C-A AUGGGU-U-C 2341 C-GA-CACUG -AAAGGUG-- GA-GGUAA-U CCCC-U-AAA CCAG-GUC-G UAGUUCGGAU 2401 CGAGGGCUGU AACUCGCCCU CGUGAAGCUG GAAU-GCGUA GUAAUCGCGU G-UC-ANU-A 2461 U-CGCGCGGU GAAUACGUCC CUGCUCCUUG CACACACCGC CNGUCACG-- ---CCACCCA 2521 A-AAAGGGCU UGGAU-GA-G -GCCA-C-A- G-CA------ ---------- ---------- 2581 ---------- ---CCU---- ---------- ---------- ---------- --------UG 2641 -UUGUGGU-C GNAUCUGGGU UCUU-UG-AG G-AGGGCG-A N......... .......... 2701 .......... .......... .......... ....~~~~~~ ~~~ // LOCUS Mb.thfoTHF 2741 bp RNA RNA 30-OCT-1992 DEFINITION Methanobacterium thermoformicicum str. THF. REFERENCE 1 AUTHORS Noelling,J., Hahn,D., Ludwig,W. and de Vos,W.M. TITLE Phylogenetic position of thermophilic Methanobacterium SP.: JOURNAL Syst. Appl. Microbiol. 16, 208-215 (1993) COMMENT Sequence information (bases 1 to 2741) Corresponding GenBank entry: X68711 title line 2:evidence for a formate-utilizing ancestor BASE COUNT 307 a 338 c 436 g 247 t 1413 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... ...UGGAUAA --CCU-GC-C CUUGGGACC- --GGGAU-AA -CCCCG-GGA 361 AA-CUGGGG- AUAAACCCGG AU-A---GGU GA--U-GCUG CC--UGGAAU ---GGU--UC 421 U-UC------ ---ACC-GAA ACACC----- ---------- -UUCG----- ---------- 481 GGUG--CCC- --AAGG--AU GGGUCUGCGG -CCG-AUUA- G-GUA-G--- UUGGUA-GGG 541 UAAC-GG-CC UACCAAGCCG AUCAUCGGUA CGGGUUGU-G -AGA-GCAA- ---------- 601 ---------G AGCCCGGAGA UGGAAC-CUG A-GA-CAAGG UUCCAG-GCC C-UACGGGGC 661 GC-AGC-A-G GCGCG-AAAC CUCCGCAAU- GCAC-GCAA- GUGCGACNGG -GGAACCCCA 721 AG-UGC-C-- ---------- ---------- ---------- --ACUCU-UA AC--GGG--G 781 UGGCUUUU-C A-GAAG-U-- ---------- ---------- ---GU-AAAA A--------- 841 ---------- --------G- CUU-C-UGG- AAUAAGG-GC UGGGCAAGAC CG-GUGCCAG 901 CCGCCGCGGU AAC-ACCGG- CAGCUC-AAG UGGUAGCC-G CUUUUAUUGG GCCUAAAGCG 961 UCCGUAGCCG -GUCU-GAUA AG-UCUC-UG GUG-AAAUC- CCACAG-CUU AA-CUGUGG- 1021 GAAUUGCU-G GAGA-UAC-U AUCAUGAC-U C-GAGGU--- --CGGGAGAG GCUGGAGGUA 1081 CUCCCAGGGU AGGG-GUGAA A-UCCUGUAA U-CCUGGGAG G-ACC-A-CC UG--U-N-GC 1141 GAANGCGU-- CCAGCUG--- ---GAACGAA CCUGACGGUG AGG-GACGAA A-GC-CAGGG 1201 -GCGCGAACC GG-AUUAGAU AC-CCGGGUA G-UCCUG-GC CGUAAACGAU GUGGA-CUUG 1261 GUGUUGGGAU GGC---UUCG A--------- ---------- ---------- --GCUGCCCC 1321 AGUGCCGAA- GGGAAGCUGU -UAAGUCCAC CGCCUG-GGA AGUACGGCC- GCAA-GGCU- 1381 GAAACUU-AA A-GGAAUUG- GCGGGGG-AG C--ACCA--C A-ACGCGUGG AGCC-UGCGG 1441 U-UUAAUUGG -AUUCAACGC CGGACA-UCU CA-CCAGGGG ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- -CGACAGC-A GUAUGAUGGC CAGGUUGAUG 1681 ACCUUGCC-N GA-CGAGCUG AGAGGAGGUG CAUGGCCGCC GUCA-GCU-- CGUACC-GUG 1741 AGGCGU-CCU G-UUAAGU-C AGGCAAC-GA GCGAGACCCA CG-CC--CUU AG--UUAC-C 1801 AG-CGGAACC ---------- ---------- ----CUUAU- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------G GGUUGCCGGG -CACA-C-U- AAG-GGGAC- 2221 CGCCAGU-GA -UAA-ACUG- -GAGGAAGG- AGUGG-ACGA CGGU--AGGU CCGUAU-GCC 2281 -CCGAAUC-C C-CU-GGGCA ACACGCGGGC UACAAUGG-C CUGGA--C-A AUGGGU-U-C 2341 C-GA-CACCG -AAAGGUG-- GA-GGUAA-U CCCC-U-AAA CCAG-GUC-G UAGUUCGGAU 2401 CGAGGGCUGU AACCCGCCCU CGUGAAGCUG GAAU-GCGUA GUAAUCGCGU G-UC-AUU-A 2461 U-CGCGCGGU GAAUACGUCC CUGCUCCUUG CACACACCGC CNGUCACG-- ---CCACCCA 2521 A-AAAGGGCU UGGAU-GA-G -GCCA-C-A- G-CA------ ---------- ---------- 2581 ---------- ---UUU---- ---------- ---------- ---------- --------GG 2641 -CUGUGGU-C GAAUCUGGGU UCUU-UG-AG G-AGGGCG-A N......... .......... 2701 .......... .......... .......... ....~~~~~~ ~~~ // LOCUS Mbb.arbori 2741 bp RNA RNA 22-JAN-1993 DEFINITION Methanobrevibacter arboriphilus. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information COMMENT Organism information Culture collection: DSM 1536; ATCC 33747 BASE COUNT 344 a 318 c 444 g 342 t 1293 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AA UCUGUUU-GA U-CCUGGCAG 61 AGGCU-ACU- GC-UAUUGGG GU-UC-GAUU AAGCCAUGCA AGU-CGAACG ---------- 121 ---------- ---------- ---------- ---------- ---------A ---------- 181 -------UUU UUUUU----- ---------- --U------- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---CGUGGCA U-ACG-GCUC 301 AGU---AAC- ACGUGGAUAA --CCU-AC-C CUUAGGACU- --GGGAU-AA -CCCUG-GGA 361 AA-CUGGGG- CUAAUACUGG AU-A---GAU CGUUU-UUUU CC--UGUAAU ---GGUA--U 421 U-UC------ ---GUC-UAA AUG------- ---------U UUUUUUU--- ---------- 481 --CG--CCU- --AAGG--AU GGGUCUGCGG -CCG-AUUA- G-GUU-G--- UUGGUU-AGG 541 UAAU-GG-CU UACCAAGCCG UUUAUCGGUA CGGGUUGU-G -AGA-GCAA- ---------- 601 ---------G AGCCCGGAGA UGGAAC-CUG A-GA-CAAGG UUCCAG-GCC C-UACGGGNN 661 GC-AGC-A-G GCGCG-AAAC CUCCGCAAU- GUGA-GAAA- UCGCGACGGG -GGGACCCCA 721 AG-UGC-C-- ---------- ---------- ---------- --AUUCU-UA AC--GGG--A 781 UGGCUUUU-C U-UAAG-U-- ---------- ---------- ---GU-AAAA A--------- 841 ---------- --------G- CUU-U-UGG- AAUAAGA-GC UGGGCAAGAC NG-GUGCCAG 901 CNGCCGCGGU AAC-ACCGG- NAGCUC-UAG UGGUGGCN-A GUUUUAUUGG GCCUAAAGCG 961 UUCGUAGCCG -GUUU-AUUA AG-UCUC-UG GUG-AAAUC- CCGUAG-CUU AA-CUAUGG- 1021 GAAUUGCU-G GAGA-UAC-U AGUA-GAC-U U-GAGGU--- --CGGGAGAG GUUAGAGGUA 1081 CUCCCAGGGU AGGG-GUGAA A-UCCUGUAA U-CCUGGGNG G-ACC-A-CC UG--U-G-GC 1141 GAAGGCGU-- CUAACUG--- ---GAACGAA CCUGACGGUG AGG-GACNAA A-GC-UAGGG 1201 -GCGCGAACC GG-AUUAGAU AC-CCGGGUA G-UCCUA-GC CGUAAACGAU GCGGA-CUUG 1261 GUGUUAGAAU GGC---UUUG A--------- ---------- ---------- --GCCGCUCU 1321 AGUGCCGAA- GGGAAGCUGU -UAAGUCCGU CGCCUG-GGA AGUACGGUC- GCAA-GACU- 1381 GAAACUU-AA A-GGAAUUG- GCGGGGG-AG C--ACCA--C A-ACGCGUGG AGCN-NNNNG 1441 U-UUAAUUGG -AUUCAACGC CGGACA-UCU CA-CCAGGGG ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- -CGACAGC-A GUAUGAUGGC CAGGUUGAUG 1681 GCCUUGCU-U GA-CAAGCUG AGAGGAGGUG CAUGGCNGCC GUCA-GCU-- CGUACC-GUG 1741 AGGCGU-CCU G-UUAAGU-C AGGCAAC-GA GCGAGACCCA CG-CC--CUU AG--UUAC-C 1801 AG-CGGAUCC -NN------- ---------- ----UUUUUU ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- GGAUGCCGGG -CACA-C-U- AAG-GGGAC- 2221 CGCCAGU-GA -UAA-AUUG- -GAGGAAGG- AGUGG-ACGA CGGU--AGGU CAGUAU-GCC 2281 -CCGAAUC-C C-CU-GGGCA ACACGCGGGC UACAAUGG-C UGAGA--C-A AUGGGU-U-C 2341 C-GA-CAUUG -AAAAGUG-- GA-GGUAA-U CCUC-U-AAA CUUA-GUC-G UAGUUCGGAU 2401 UGAGGGCUGU AACUCGCCCU CAUGAAGCUG GAAU-GCGUA GUAAUCGCGU G-UC-AUA-A 2461 U-CGCGCGGU GAAUACGUCC CUGCUCCUUG CACACACCGC CCGUCACG-- ---CCACCCA 2521 A-AAAGGGCU UGGAU-GA-G -GCUU-U-U- G-CC------ ---------- ---------- 2581 ---------- ---UUU---- ---------- ---------- ---------- --------GG 2641 -UUAAAUU-C GAAUCUAGGU UUUU-UG-AG G-NGGGCG-A AGUCGUAACA AGG....... 2701 ....GAACCU G......GAU CACCUCCU~~ ~~~~~~~~~~ ~~~ // LOCUS Mbb.rumina 2741 bp RNA RNA 01-MAR-1993 DEFINITION Methanobrevibacter ruminantium str. M-1. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information COMMENT Organism information Culture collection: ATCC 35063; DSM 1093; OCM 146 BASE COUNT 344 a 317 c 437 g 328 t 1315 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AA UCUGUUU-GA U-CCUGGCAG 61 AAGCU-ACU- GC-UAUUGGG AU-UC-GAUU AAGCCAUGCA AGU-CGAACG ---------- 121 ---------- ---------- ---------- ---------- -------AAU ---------- 181 ---------U UAG------- ---------- --AUU----- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---CGUGGCG U-ACG-GCUC 301 AGU---AAC- ACGUGGAUAA --CCU-AC-C CUUAGGACU- --GGGAU-AA -CCCUG-GGA 361 AA-CUGGGG- CUAAUACCGG AU-A---GAU AA--U-UUUU CC--UGGAAU ---GGUA--U 421 U-UU------ ---GUU-UAA AUG------- ---------- UUUUUU---- ---------- 481 --CG--CCU- --AAGG--AU GGGUCUGCGG -CAG-AUUA- G-GUA-G--- UUGGUU-AGG 541 UAAU-GG-CU UACCAAGCCU AUGAUCUGUA CGGGUUGU-G -AGA-GCAA- ---------- 601 ---------G AGCCNGGAGA UGGAAC-CUG A-GA-CAAGG UUCCAG-GCC C-UACGGGGN 661 GC-AGC-A-G GCGCG-AAAC CUCCGCAAU- GUGA-GAAA- UCGCNACGGG -GGGAUCCCA 721 AG-UGC-C-- ---------- ---------- ---------- --AUUCU-UA AC--GGG--A 781 UGGCUUUU-C U-UAAG-U-- ---------- ---------- ---GU-AAAA A--------- 841 ---------- --------G- CUU-U-UGG- AAUAAGA-GC UGGGCAAGAC CG-GUGCCAG 901 NNGCCGCGGU AAC-ACCGG- NAGCUC-UAG UGGUAGCU-A CUUUUAUUGG GCCUAAAGCG 961 UUCGUAGCCG -GUUU-GAUA AG-UCAC-UG GUG-AAAUC- CUAUAG-CUU AA-CUGUGG- 1021 GAAUUGCU-G GUGA-UAC-U GUUG-AAC-U U-GAGGU--- --CGGGNGAG GUUAGCGGUA 1081 CUCCCAGGGU AGAG-GUGAA A-UUCUGUAA U-CCUGGNNG G-ACC-A-CC UG--U-G-GC 1141 GAAGGCGG-- CUAACUG--- ---GAACGAA CCUGACGGUG AGG-GACNNA A-GC-CAGGG 1201 -GCGCGAACC GG-AUUAGAU AC-CCGGGUA G-UCCUG-GC CGUAAACGAU GCGGA-CUUG 1261 GUGUUGGGAU GGC---UUUG A--------- ---------- ---------- --GCNNUUCC 1321 GGUGCCGAA- GGGAAGCUGU -UAAGUCCGC CGCCUG-GNN AGUACGGUC- GCAA-GACU- 1381 GAAACUU-AA A-GGAAUUG- GNNNNGG-AG C--ACCA--C A-ACGCGUGG AGCN-UGCGG 1441 U-UUAAUUGG -AUUCAACGC CGGACA-UCU CA-CCAGGAG ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- -CGACAGC-U GUAUGAUUAC CAGGCUGAUG 1681 ACCUUGUU-U GA-CUAGCUG AGAGGAGGUG CAUGGCCGCC GUCA-GCU-- CGUACC-GUG 1741 AGGCGU-CCU G-UUAAGU-C AGGCAAC-GA GCGAGACCCA CG-CC--CUU AG--UUAC-C 1801 AU-CAGAUUC ---------- ---------- ----UCCG-- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- GAAUGCUGGG -CACA-C-U- AAG-GNNAC- 2221 CGCCAGU-GA -UAA-ACUG- -GAGGAAGG- AGUGG-ACGA CGGN--AGGU CGGUAU-GCC 2281 -CCGAAUC-C C-CU-GGGCU ACACGCGGGC UACAAUGG-C UGGGA--C-A AUGGGU-U-C 2341 C-GA-CGCCG -AAAGGCG-- AA-GGCAA-U CUUU-U-AAA CCUA-GUC-G UAGUUCGGAU 2401 UGAGGGCUGU AACUCGCCCU CAUGAAGCUG GAAU-GCGUA GUAAUCGCGU G-UC-ACA-A 2461 U-CGCGCGGU GAAUACGUCC CUGCUCCUUG CACACACCGC CCGUCACA-- ---CCACCCA 2521 A-AAAGGGCU GGGAU-GA-G -GAUA-U-G- G-UC------ ---------- ---------- 2581 ---------- ---UGU---- ---------- ---------- ---------- --------GG 2641 -UUGUAUU-C GAAUCUCGGU UUUU-UG-AG G-AGGG.... ....GUAACA AG........ 2701 ....GAACCU G......GAU CACCUCCU~~ ~~~~~~~~~~ ~~~ // LOCUS Mpr.stadtm 2741 bp RNA RNA 19-DEC-1991 DEFINITION Methanosphaera stadtmanii str. MCB-3. REFERENCE 1 AUTHORS Rouviere,P., Mandelco,L. and Woese,C.R. TITLE Phylogenetic analysis of the archaea JOURNAL Syst. Appl. Microbiol. 15, 363-371 (1993) COMMENT Organism information Culture collection: DSM 3091 Sequence information (bases 1 to 2741) Corresponding GenBank entry: M59139 (Release 77.0) Source of sequence: CR Woese lab Sequence information (bases 1 to 1424) BASE COUNT 367 a 305 c 416 g 332 t 1321 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AA UCCGUUU-GA U-CCUGGCGG 61 AAGCU-ACU- GC-UAUUGGG AU-UC-GAUU AAGCCAUGCA AGU-CGAAUG ---------- 121 ---------- ---------- ---------- ---------- -------AAC ---------- 181 ---------C UA-------- ---------- --GUU----- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---CAUGGCA U-ACG-GCUC 301 AGU---AAC- ACGUGGAUAA --CCU-AC-C CUUAGGACC- --GGGAU-AA -CUUUG-GGA 361 AA-CUGAAG- AUAAUACUGG AU-A---UUA GG--U-UAUG CC--UGGAAU ---GGU--UU 421 A-CC------ ---UUU-GAA AUG------- ---------- UAUUUUU--- ---------- 481 --CG--CCU- --AAGG--AU AGAUCUGCGG -CUG-AUUA- G-GUC-G--- UUGGUG-GGG 541 UAAU-GG-CC CACCAAGCCG AUGAUCGGUA CGGGUUGU-G -AGA-GCAA- ---------- 601 ---------G AGCCCGGAGA UGGAAC-CUG A-GA-CAAGG UUCCAG-ACC C-UACGGGGU 661 GC-AGC-A-G GCGCG-AAAC CUCCGCAAU- GUAC-GCAA- GUGCGACGGG -GGGAUCCCA 721 AG-UGU-U-- ---------- ---------- ---------- --AUUCU-UA AC--AGA--A 781 UAACUUUU-C A-UUAG-U-- ---------- ---------- ---GU-AAAA A--------- 841 ---------- --------G- CUU-U-UAG- AAUAAGA-GC UGGGCAAGAC CG-GUGCCAG 901 CCGCCGCGGU AAC-ACCGG- CAGCUC-AAG UGGUAGCU-G UUUUUAUUGG GCCUAAAGCG 961 UUCGUAGCCG -GUUU-GAUA AG-UCUU-UG GUG-AAAGC- UUGUAG-CUU AA-CUAUAA- 1021 GAAUUGCU-G AAGA-UAC-U GUCA-GAC-N U-GAAGU--- --CGGGAGAG GUUAGAGGUA 1081 CUACCGGGGU AGGG-GUGAA A-UCCUAUAA U-CCUGGGAG G-ACC-A-CC UG--U-G-GC 1141 GAAGGCGU-- CUAACUG--- ---GAACGAU CUUGACGGUG AGU-AACGAA A-GC-CAGGG 1201 -GCGCGAACC GG-AUUAGAU AC-CCGGGUA G-UCCUG-GC CGUAAACGAU GUGGA-CUUG 1261 GUGUUGGAAU GGC---CUCG A--------- ---------- ---------- --GUUGUUCC 1321 GGUGCCGAA- GGGAAGCUGU -UAAGUCCAC CGCCUG-GGA AGUACGGUC- GCAA-GACU- 1381 GAAACUU-AA A-GGAAUUG- GCGGGGG-AG C--ACCA--C A-ACGCGUGG AGCC-UNNNG 1441 U-UUAAUUGG -AUUCAACGC CGGACA-UCU CA-CCAGGAG ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- -CGACAG--A GAAUGAUAAU CAGGUUGAUG 1681 ACCUUAUU-U GA-CUAGCUG AGAGGAGGUG CAUGGCCGCC GUCA-GCU-- CGUACC-GUG 1741 AAGCGU-CCU G-UUAAGU-C AGGCAAC-GA GCGAGACCCA CG-CC--CUU AG--UUAC-C 1801 AA-CACAAUC ---------- ---------- ----UCUG-- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- GAUUGGUGGG -CACA-C-U- AGG-GGGAC- 2221 CGCCAGU-GA -UAA-ACUG- -GAGGAAGG- AGUGG-ACGA CGGU--AGGU CAGUAU-GCC 2281 -CCGAAUC-U C-CU-GGGCU ACACGCGGGC UACAAUGG-C UAUGG--C-A AUGGGU-U-U 2341 C-UG-CACUG -AAAAGUG-- AU-GGUAA-U CUCC-U-AAA CAUA-GUC-U UAGUUCGGAU 2401 UGAGGGCUGU AACUCGCCCU CAUGAAGCUG GAAU-GCGUA GUAAUCGCAU G-UC-ACA-A 2461 C-CGUGCGGU GAAUACGUCC CUGCUCCUUG CACACACCGC CCGUCACA-- ---CCACCCA 2521 A-AAAGGGUU UGGAU-GA-G -GCCA-U-A- A-U----UU- ---------- ---------- 2581 ---------- ---UCA---- ---------- ---------- ---------- -----AA-UG 2641 -UUAUUGU-C GAAUCUAGGU UUUU-UG-AG G-AGG..... .......... .......... 2701 .......... .......... .......... ....~~~~~~ ~~~ // LOCUS Mb.bryanti 2741 bp RNA RNA 19-DEC-1991 DEFINITION Methanobacterium bryantii str. M.o.H.. REFERENCE 1 AUTHORS Rouviere,P., Mandelco,L. and Woese,C.R. TITLE Phylogenetic analysis of the archaea JOURNAL Syst. Appl. Microbiol. 15, 363-371 (1992) COMMENT Organism information Culture collection: DSM 863 (T) Sequence information (bases 1 to 2741) Corresponding GenBank entry: M59124 (Release 77.0) Source of sequence: CR Woese lab Sequence information (bases 1 to 1448) BASE COUNT 340 a 342 c 456 g 305 t 1298 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AA UCCGUUU-GA U-CCUGGCGG 61 AGGCC-ACU- GC-UUUUGGG GU-UC-GAUU AAGCCAUGCA AGU-CGAACG ---------- 121 ---------- ---------- ---------- ---------- ----AAUCAC ---------- 181 ---------U UCG------- ---------- --GUGGUU-- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---CGUGGCG A-ACG-GCUC 301 AGU---AAC- ACGUGGAUAA --UCU-AC-C CUUAGGACU- --GGGAU-AA -CCCUG-GGA 361 AA-CUGGGG- AUAAUACCGG AU-A---GUU AG--G-AGUU CC--UGGAAU ---GGU--CU 421 U-CU------ ---UUU-UAA AUGU------ ---------- -UCAG----- ---------- 481 -GCG--CCU- --AAGG--AU GGAUCUGCGG -CAG-AUUA- G-GUA-G--- UUGGUG-GGG 541 UAAU-GG-CC CACCAAGCCU UUGAUCUGUA CGGGUUGU-G -AGA-GCAA- ---------- 601 ---------G AGCCCGGAGA UGGAAC-CUG A-GA-CAAGG UUCUAG-GCC C-UACGGGGC 661 GC-AGC-A-G GCGCG-AAAC CUCCGCAAU- GCAC-GAAA- GUGCGACGGG -GGGACCCCA 721 AG-UGC-C-- ---------- ---------- ---------- --ACUCU-UA AC--GGG--G 781 UGGCUUUU-U U-UGAG-U-- ---------- ---------- ---GU-AAAA A--------- 841 ---------- --------G- CUU-U-GAG- AAUAAGA-GC UGGGCAAGAC CG-GUGCCAG 901 CCGCCGCGGU AAC-ACCGG- CAGCUC-AAG UGGUGGCC-A UUUUUAUUGG GCCUAAAGCG 961 UUCGUAGCCG -GCUU-GAUA AG-UCUC-UG GUG-AAAUC- CCAUAG-CUU AA-CUGUGG- 1021 GNAUUGCU-G GAGA-UAC-U AUUA-GGC-U U-GAGGC--- --CGGGAGAG GUUAGGGGUA 1081 CUCCCAGGGU AGGG-GUGAA A-UCCUAUAA U-CCUGGGAG G-ACC-A-CC UG--U-G-GC 1141 GAAGGCGC-- CUAACUG--- ---GAACGGA CCUGACGGUG AGU-AACGAA A-GC-CAGGG 1201 -GCGCGAACC GG-AUUAGAU AC-CCGGGUA G-UCCUG-GC CGUAAACGAU GCGGA-CUUG 1261 GUGUUGGAAU GGC---UUCG A--------- ---------- ---------- --GCUGCUCC 1321 AGUGCCGAA- GGGAAGCUGU -UAAGUCCGC CGCCUG-GGA AGUACGGUC- GCAA-GACU- 1381 GAAACUU-AA A-GGAAUUG- GCGGGGG-AG C--ACCA--C A-ACGCGUGG AGCN-UGCGG 1441 U-UUAAUUGG -AUUCAACGC CGGACA-UCU CA-CCAGGGG ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- -CGACAGC-A GAAUGAUGGC CAGGUUGACG 1681 ACCUUGCU-U GA-CAAGCUG AGAGGAGGUG CAUGGCCGCC GUCA-GCU-- CGUACC-GUG 1741 AGGCGU-CCU G-UUAAGU-C AGGCAAC-GA GCGAGACCCA CG-CC--CUU AG--UUAC-C 1801 AG-CGGAUCC ---------- ---------- ----UCCG-- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- GGAUGCCGGG -CACA-C-U- AAG-GNNAC- 2221 CGCCAGU-GA -UAA-ACUG- -GAGGAAGG- AGUGG-ACGA CGGU--AGGU CNGUAU-GCC 2281 -CCGAAUC-C C-CU-GGGCA ACACGCGGGC UACAAUGG-C UAUGA--C-A AUGGGU-U-C 2341 C-GA-CACUG -AAAGGUG-- AA-GGUAA-U CUCC-U-AAA CAUA-GUC-U UAGUUCGGAU 2401 CGAGGGCUGU AACCCGCCCU CGUGAAGCUG GAAU-GCGUA GUAAUCGCGU G-UC-AUA-A 2461 U-CGCGCGGU GAAUACGUCC CUGCUCCUUG CACACACCGC CCGUCACG-- ---CCACCCA 2521 A-AAAGGGUU UGGAU-GA-G -GCCU-C-A- G-UC------ ---------- ---------- 2581 ---------- ---GUU---- ---------- ---------- ---------- --------GG 2641 -UUGGGGU-C GAAUCUGGGU UCUU-UG... .......... ....GUAACA AG........ 2701 ....GAACCU G......GAU CACCUCCU~~ ~~~~~~~~~~ ~~~ // LOCUS sym.Metp.p 2741 bp RNA RNA 07-DEC-1992 DEFINITION endosymbiont of Metopus palaeformis REFERENCE 1 AUTHORS Embley,M.T., Finlay,B., Thomas,R.H. and Dyal,P. TITLE The use of rRNA sequences and fluorescent probes to JOURNAL J. Gen. Microbiol. 138, 1479-1487 (1992) COMMENT Sequence information (bases 1 to 2741) Corresponding GenBank entry: M86386 IDENT: relative M.formic title line 2:investigate the phylogenetic positions of the anaerobic title line 3:ciliate Metopus palaeformis and its title line 4:archaeobacterial endosymbiont BASE COUNT 108 a 96 c 122 g 89 t 2326 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 ..GCC-ACU- GC-UAUUGGG GU-CC-GAUU AAGCCAUGCA AGU-CGAACG ---------- 121 ---------- ---------- ---------- ---------- ----AAA-UC ---------- 181 ---------U UCG------- ---------- --GAAUUU-- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---CGUGGCA A-ACG-GCUC 301 AGU---AAC- ACGUGGAUAA --CCU-AC-C CUUAGGACU- --GGGAU-AA -CCCCG-GGA 361 AA-CUGGGG- ACAAUACCAG AU-A---UGU AG--A-GAUU CC--UGGAAU ---GG-U-CC 421 U-CU------ ---AUU-UAA A-UG------ ---------- -UUCCG---- ---------- 481 -ACG--CCU- --AAGG--AU GGAUCUGCGG -CAG-AUUA- G-GUA-G--- UUGGUG-GGG 541 UAAU-UG-CC CACCAAGCCU UUGAUCUGUA CGGGUUGU-G -AGA-GCAA- ---------- 601 ---------G AGCCCGGAGA UGGAAC-CUG A-GA-CAAGG UUCCAG-GCC C-UACGGGGC 661 GC-AGC-A-G GCGCG-AAAC CUCCGCAAU- GCGA-GCAA- UCGCGACGGG -GGANCCCCA 721 AG-UGC-C-- ---------- ---------- ---------- --ACUCU-UA AC--GGG--G 781 UGGCUUUU-C U-GAAG-U-- ---------- ---------- ---GU-AAAA A--------- 841 ---------- --------G- CUU-U-AGG- AAU....... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .......... .......... .......... .......... .......... .......... 1441 .......... .......... .......... .......... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... ....~~~~~~ ~~~ // LOCUS Mb.formici 2741 bp RNA RNA 15-SEP-1990 DEFINITION Methanobacterium formicicum. REFERENCE 1 AUTHORS Lechner,K., Wich,G. and Boeck,A. TITLE The nucleotide sequence of the 16S rRNA gene and flanking JOURNAL Syst. Appl. Microbiol. 6, 157-163 (1985) COMMENT Organism information Culture collection: DSM 1312 Sequence information (bases 1 to 2741) Corresponding GenBank entry: M36508 (Release 77.0) title line 2:regions from Methanobacterium formicicum: The phylogenetic title line 3:relationship between methanogenic and halophilic archaebacteria. Sequence information (bases 1 to 1476) BASE COUNT 348 a 355 c 472 g 301 t 1265 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AG UCCGUUU-GA U-CCUGGCGG 61 AGGCC-ACU- GC-UAUUGGG UU-UC-GAUU AAGCCAUGCA AGU-CGAACG ---------- 121 ---------- ---------- ---------- ---------- ------AUCC ---------- 181 ---------U UCG------- ---------- --GGGU---- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---CGUGGCG U-ACG-GCUC 301 AGU---AAC- ACGUGGAUAA --CCU-AA-C CUUAGGACU- --GGGAU-AA -CCCUG-GGA 361 AA-CUGGGG- AUAAUACCGG AU-A---UGU AG--G-GCUG CC--UGGAAU ---GGUU--C 421 C-CU------ ---AUU-GAA AUGU------ ---------- -UCCG----- ---------- 481 -ACG--CCU- --AAGG--AU GGAUCUGCGG -CAG-AUUA- G-GUA-G--- UUGGCG-GGG 541 UAAA-UG-CC CACCAAGCCA GUAAUCUGUA CGGGUUGU-G -AGA-GCAA- ---------- 601 ---------G AGCCCGGAGA UGGAAC-CUG A-GA-CAAGG UUCCAG-GCC C-UACGGGGC 661 GC-AGC-A-G GCGCG-AAAC CUCCGCAAU- GCAC-GAAA- GUGCGACGGG -GGAAACCCA 721 AG-UGC-C-- ---------- ---------- ---------- --ACUCU-UA AC--GGG--G 781 UGGCUUUU-C U-UAAG-U-- ---------- ---------- ---GU-AAAA A--------- 841 ---------- --------G- CUU-U-UGG- AAUAAGA-GC UGGGCAAGAC CG-GUGCCAG 901 CCGCCGCGGU AAC-ACCGG- CAGCUC-AAG UGGUGGCC-G UUUUUAUUGG GCCUAAAGCG 961 UUCGUAGCCG -GCUU-GAUA AG-UCUC-UG GUG-AAAUC- UCACGG-CUU AA-CCGUGA- 1021 GAAUUGCU-G GAGA-UAC-U AUUA-GGC-U U-GAGGC--- --CGGGAGAG GUUAGCGGUA 1081 CUCCCGGGGU AGGG-GUGAA A-UCCUAUAA U-CCCGGGAG G-ACC-A-CC UG--U-G-GC 1141 GAAGGCGG-- CUAACUG--- ---GAACGGG CCUGACGGUG AGU-AACGAA A-GC-CAGGG 1201 -GCGCGAACC GG-AUUAGAU AC-CCGGGUA G-UCCUG-GC CGUAAACGAU GUGGA-CUUG 1261 GUGUUGGGAU GGC---UCCG A--------- ---------- ---------- --GCUGCCCC 1321 AGUGCCGAA- GGGAAGCUGU -UAAGUCCAC CGCCUG-GGA AGUACGGUC- GCAA-GACU- 1381 GAAACUU-AA A-GGAAUUG- GCGGGGG-AG C--ACCA--C A-ACGCGUGG AGCC-UGCGG 1441 U-UUAAUUGG -AUUCAACGC CGGACA-UCU CA-CCAGGGG ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- -CGACAGC-A GAAUGAUAGC CAGGUUGAUG 1681 ACCUUGCU-U GA-CAAGCUG AGAGGAGGUG CAUGGCCGCC GUCA-GCU-- CGUACC-GUG 1741 AGGCGU-CCU G-UUAAGU-C AGGCAAC-GA GCGAGACCCA CG-CC--CUU AG--UUAC-C 1801 AG-CGGAUCC ---------- ---------- ----UUCG-- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- GGAUGCCGGG -CACA-C-U- AAG-GGGAC- 2221 CGCCAGU-GA -UAA-ACUG- -GAGGAAGG- AGUGG-ACGA CGGU--AGGU CCGUAU-GCC 2281 -CCGAAUC-C C-CU-GGGCU ACACGCGGGC UACAAUGG-U UAGGA--C-A AUGGGU-U-C 2341 C-GA-CACUG -AAAGGUG-- GA-GGUAA-U CUCC-U-AAA CCUG-GCC-U UAGUUCGGAU 2401 UGAGGGCUGU AACUCGCCCU CAUGAAGCUG GAAU-GCGUA GUAAUCGCGU G-UC-AUA-A 2461 C-CGCGCGGU GAAUACGUCC CUGCUCCUUG CACACACCGC CCGUCACG-- ---CCACCCA 2521 A-AAAGGGUU UGGAU-GA-G -GCCA-U-A- G-UC------ ---------- ---------- 2581 ---------- ---UUU---- ---------- ---------- ---------- --------GG 2641 -UUAUGGU-C GAAUCUAGGU UCUU-UG-AG G-AGGGCG-A AGUCGUAACA AGGUAGCCGU 2701 AGGGGAACCU GCGGCUGGAU CACCUCCU~~ ~~~~~~~~~~ ~~~ // LOCUS Mt.fervid1 2741 bp RNA RNA 01-FEB-1991 DEFINITION Methanothermus fervidus. REFERENCE 1 AUTHORS Haas,E.S., Brown,J.W., Daniels,C.J. and Reeve,J.N. TITLE Genes encoding the 7S RNA and a Ser-tRNA are linked to one JOURNAL Gene 90, 51-59 (1990) COMMENT Sequence information (bases 1 to 2741) Corresponding GenBank entry: M32222 title line 2:of the two rRNA operons in the genome of the title line 3:extremely thermophilic archaebacterium Methanothermus fervidus BASE COUNT 305 a 421 c 526 g 228 t 1261 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~AC UCCGUUU-GA U-CCUGGCGG 61 AGGCC-ACU- GC-UAUGGGG GU-CC-GACU AAGCCAUGCA AGU-CGAACG ---------- 121 ---------- ---------- ---------- ---------- -------GGC ---------- 181 --------CU UGU------- ---------- --GCC----- ---------- ---------- 241 ---------- ---------- ---------- ---------- ---CGUGGCG A-ACG-GCUC 301 AGU---AAC- ACGUGGACAA --CCU-AC-C CUGGGGUCC- --GGGAU-AA -CCCCG-GGA 361 AA-CUGGGG- CUAAUCCCGG AU-A---GGC GA--G-GUCU CC--UGGAAU ---GGGG--C 421 C-UC------ ---GCC-GAA A-GGUC---- ---------- -UUUU----- ---------G 481 ACCG--CCC- --CAGG--AU GGGUCUGCGG -CCG-AUUA- G-GUA-G--- UUGGUA-GGG 541 UAAC-GG-CC UACCAAGCCU ACGAUCGGUA CGGGUUGU-G -AGA-GCAA- ---------- 601 ---------G AGCCCGGAGA CGGGGC-CUG A-GA-CAAGG CCCCGG-GCC C-UACGGGGC 661 GC-AGC-A-G GCGCG-AAAA CUCCGCAAU- GCGC-GAAA- GCGCGACGGG -GGGACCCCC 721 AG-UGC-C-- ---------- ---------- ---------- --ACUCC-GU AA--GGA--G 781 UGGCUUUU-C C-GGAG-U-- ---------- ---------- ---GU-AAAA A--------- 841 ---------- --------G- CUC-C-GGG- AAUAAGG-GC UGGGCAAGAC CG-GUGCCAG 901 CCGCCGCGGU AAC-ACCGG- CAGCCC-GAG UGGUGGCC-G CGUUUAUUGG GCCUAAAGCG 961 UCCGUAGCCG -GUCC-GGUA AG-UCUC-CG GUG-AAAGC- CCGCAG-CUC AA-CUGCGG- 1021 GAGUAGCC-G GAGA-UAC-U GCCG-GAC-U U-GGGGC--- --CGGGAGAG GCCGGAGGUA 1081 CCCCCGGGGU AGGG-GUGAA A-UCCUGUAA U-CCCGGGGG G-ACC-A-CC UG--U-G-GC 1141 GAAGGCGU-- CCGGCUG--- ---GAACGGG CCCGACGGUG AGG-GACGAA A-GC-CAGGG 1201 -GAGCGAACC GG-AUUAGAU AC-CCGGGUA G-UCCUG-GC CGUAAACGAU GCGGA-CUUG 1261 GUGUUGGGGC AAC---CUCG A--------- ---------- ---------- --GUUGCCCC 1321 AGUGCCGAA- GGGAAGCCGU -UAAGUCCGC CGCCUG-GGG AGUACGGCC- GCAA-GGCU- 1381 GAAACUU-AA A-GGAAUUG- GCGGGGG-AG C--ACCA--C A-ACGCGUGG AGCC-UGCGG 1441 U-UUAAUUGG -AUUCAACGC CGGACA-CCU CA-CCGGGGG ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- -CGACGGC-A GGAUGAUGGC CAGGUUGAUG 1681 ACCUUGCC-U GA-CGAGCCG AGAGGAGGUG CAUGGCCGCC GUCA-GCU-- CGUACC-GUG 1741 AGGCGU-CCU G-UUAAGU-C AGGCAAC-GA GCGAGACCCG CG-CC--CCU AG--UUGC-C 1801 AG-CGGGUCC C--------- ---------- ----GUAA-- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------G GGACGCCGGG -CACA-C-U- AGG-GGGAC- 2221 CGCCAGC-GA -UAA-GCUG- -GAGGAAGG- UGCGG-GCGA CGGU--AGGU CCGUAU-GCC 2281 -CCGAAAC-C C-CC-GGGCU ACACGCGGGC UACAAUGG-C CGGGA--C-A AUGGGU-A-C 2341 C-GA-CCCCG -AAAGGGG-- GA-GGUAA-U CCCA-U-AAA CCCG-GCC-G UAGUUCGGAU 2401 CGAGGGCUGC AACUCGCCCU CGUGAAGCUG GAAU-GCGUA GUAAUCGCGG G-UC-ACU-A 2461 U-CCCGCGGU GAAUACGUCC CUGCUCCUUG CACACACCGC CCGUCACG-- ---CCACCCA 2521 A-ACGGGGUU CGGAU-GA-G -GCCA-U-G- G-CC------ ---------- ---------- 2581 ---------- ---UCU---- ---------- ---------- ---------- --------GG 2641 -CCAUGGU-C GAAUCCGGGC CCCG-UG-AG G-AGGGCG-A AGUCGUAACA AGGUAGCCGU 2701 AGGGGAACCU GCGGCUGGAU CACCUCCU~~ ~~~~~~~~~~ ~~~ // LOCUS Mcr.parvum 2741 bp RNA RNA 22-JAN-1993 DEFINITION Methanocorpusculum parvum str. XII. REFERENCE 1 AUTHORS Rouviere,P., Mandelco,L., Winker,S. and Woese,C.R. TITLE A Detailed Phylogeny for the Methanomicrobiales JOURNAL Syst. Appl. Microbiol. 15, 363-371 (1993) COMMENT Organism information Culture collection: ATCC 43721; DSM 3823 Sequence information (bases 1 to 2741) Corresponding GenBank entry: M59147 (Release 77.0) Source of sequence: CR Woese lab BASE COUNT 334 a 319 c 406 g 288 t 1394 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~NU UCUGGUU-GA U-CCUGCCAG 61 AGGCC-AUU- GC-UAUCAGG GU-NU-GACU AAGCCAUGCG AGU-CGAGAG ---------- 121 ---------- ---------- ---------- ---------- --------GU ---------- 181 --------GU AAG------- ---------- --AC------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---CUCGGCA U-ACU-GCUC 301 AGU---AAC- ACGUGGUUAA --CCU-GC-C CUAAGGUGG- --AGAAU-AC -UCCCG-GGA 361 AA-CUGGGG- CUAAUGCUCC AU-A---GUG GA--U-AUGU CC--UGGAAU ---GG-U-AU 421 A-UC------ ---CUC-GAA A-GA------ ---------- -UCCG----- ---------- 481 -UCG--CCU- --UAGG--AU GGGACUGCGU -CCG-AUUA- G-GUU-G--- UUGGCG-GGG 541 UAAC-GG-CC CACCAAGCCA UUGAUCGGUA CGGGUUGU-G -GGA-GCAA- ---------- 601 ---------G AUCCCGGAGA UGGAUU-CUG A-GA-CAUGA AUCNAG-GCC C-UACGGGGC 661 GC-AGC-A-G GCGCG-CAAA CUUUACAAU- GCGA-GCAA- UCGUGAUAAG -GAAACCCUG 721 AG-UGC-C-- ---------- ---------- ---------- ----UGU-CG AU--GCA--- 781 -GGCNGUU-C A-UAUA-U-- ---------- ---------- ---CU-AAAU C--------- 841 ---------- --------A- UAU-G-UGA- AGAAAGG-GC AGGGCAAGAC CN-GUGCCAG 901 CCGCCGCGGU AAU-ACCGG- CUGCUC-GAG UGAUGGCN-A CUAUUACUGG GUUUAAAGCG 961 UCCGUAGCUU -GACU-GUUA GG-UCUC-UU GGG-AAAUC- UUCACG-CUC AA-CGUGAA- 1021 GGCGUCUA-A GAGA-UAC-C GGCA-GUC-U U-GGAAC--- --UGGGAGAG GUAAACCGUA 1081 CUUCGGGGGU AGGA-GUGAA A-UCUUGUAA U-CCUCGAGG G-ACG-A-CC UA--U-G-GC 1141 GAAGGCAG-- UUUACCA--- ---GAACAGC UUCGACAGUG AGG-GACGAA A-GC-UGGGG 1201 -GAGCAAACG GG-AUUAGAU AC-CCCGGUA G-UCCCA-GC CGUAAACAAU GUGCG-UUAG 1261 GUGUGUCGGU AAC---CACG U--------- ---------- ---------- --GUUACUGA 1321 UGCGCCGAA- GAGAAAUCGU -GAAACGCAC CACCUG-GGA AGUACGGUC- GCAA-GGCU- 1381 GA........ .......... .......... .......... .......... .......... 1441 .......... .....AACGC CGGACA-UCU CA-CCGGAUA ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- -AGACAGC-U GAAUGAUUGU CAAUCUGAAG 1681 GUUUUACA-U GA-CUAGCUG AGAGGAGGUG CAUGGCCGUC GUCA-GUU-- CGUACU-GUG 1741 AAGCAU-CCU G-UUAAGU-C AGGCAAC-GA GCGAGACCCA CG-CC--GAC AA--UUGC-C 1801 AG-CAGCAUC ---------- ---------- ----UCCG-- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- GAUGGCUGGG -GACA-U-U- GUC-GGGAC- 2221 CGCCUCU-GC -UAA-AGGG- -GAGGAAGG- AAUGG-GCAA CGGU--AGGU CAGCAU-GCC 2281 -CCGAAUU-A U-CC-GGGCU ACACGCGGGC UACAAUGG-A CGGGA--C-A AUGGGU-A-A 2341 C-AA-CACCG -AAAGGUG-- CA-GUCAA-U CUCC-G-AAC CCCG-CCC-U UAGUUAGGAU 2401 UGCGGGUUGC AACUCACCCG CAUGAAUCUG GAAU-CUGUA GUAAUCGCGU U-UC-ACU-A 2461 U-AGCGCGGU GAAUACGUCC CUNCUCCUUG CACACACCGC CCGUCAAA-- ---CCAUCCU 2521 A-GUGGGGUU UGGAU-GA-G -UCCC-U-N- G-U------- ---------- ---------- 2581 ---------- ---CUUU--- ---------- ---------- ---------- ---------G 2641 -CCGGGGU-C GAAUCUAGGU UCCG-UG-AG G-AGGG.... .......... .......... 2701 .......... .......... .......... ....~~~~~~ ~~~ // LOCUS Mcr.labrea 2741 bp RNA RNA 10-OCT-1992 DEFINITION Methanocorpusculum labreanum str. Z. REFERENCE 1 AUTHORS No information JOURNAL No information TITLE No information COMMENT Organism information Culture collection: ATCC 43576; DSM 4855 Sequence information (bases 1 to 2741) Corresponding GenBank entry: none Source of sequence: CR Woese lab BASE COUNT 343 a 330 c 420 g 299 t 1349 others ORIGIN 1 ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~~~ ~~~~~~~~NU UCUGGUU-GA U-CCUGCCAG 61 AGGCC-AUU- GC-UAUCAGG GU-UU-GACU AAGCCAUGCG AGU-CGAGAG ---------- 121 ---------- ---------- ---------- ---------- --------GU ---------- 181 --------GU AAG------- ---------- --AC------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---CUCGGCA U-ACU-GCUC 301 AGU---AAC- ACGUGGUUAA --CCU-GC-C CUAAGGUGG- --AGAAU-AC -UCCCG-GGA 361 AA-CUGGGG- CUAAUGCUCC AU-A---GUG GA--U-AUGU CC--UGGAAU ---GG-U-AU 421 A-UC------ ---CUC-GAA A-GA------ ---------- -UCCG----- ---------- 481 -UCG--CCU- --UAGG--AU GGNNCUGCGU -CCG-AUUA- G-GUU-G--- UUGGCG-GGG 541 UAAC-GG-CC CACCAAGCCN UUUAUCGGUA CGGGUUGU-G -GGA-GCAA- ---------- 601 ---------G AUCCCGGAGA UGGAUU-CUG A-GA-CAUGA AUCCAG-GCC C-UACGGGGC 661 GC-AGC-A-G GCGCG-CAAA CUUUACAAU- GCGA-GCAA- UCGUGAUAAG -GAAACCCUG 721 AG-UGC-C-- ---------- ---------- ---------- ----UGU-CG AU--GCA--- 781 -GGCNGUU-C A-UAUA-U-- ---------- ---------- ---CU-AAAU C--------- 841 ---------- --------A- UAU-G-UGA- AGAAAGG-GC AGGGCAAGAC CN-GUGCCAG 901 CCGCCGCGGU AAU-ACCGG- CUGCUC-GAG UGAUGGCN-N CUAUUACUGG GUUUAAAGCG 961 UCCGUAGCUU -GACU-GUUA GG-UCUC-UU GGG-AAAUC- UUCGCG-CUC AA-CGUGAA- 1021 GGCGUCUA-A GAGA-UAC-C GGCA-GNC-U U-GGAAC--- --UGGGAGAG GUAAACCGUA 1081 CUUCGGGGGU AGGA-GUGAA A-UCUUGUAA U-CCUCGAGG G-ACG-A-CC UA--U-G-GC 1141 GAAGGCAG-- UUUACCA--- ---GNACAGC UUCGACAGUG AGG-GACNNA A-GC-UGGGG 1201 -GAGCAAACG GG-AUUAGAU AC-CCCGGUA G-UCCCA-GC CGUAAACAAU GUGCG-UUAG 1261 GUGUGUCGGU AAC---CACG U--------- ---------- ---------- --GUUACUGA 1321 UGCGCCGAA- GAGAAAUCGU -GAAACGCAC CACCUG-GGA AGUACGGUC- GCAA-GGCU- 1381 GAAACUU-AA A-GGAAUUG- GCGGGNN-AG C--ACCA--C A-ACAGGUGG AGCC-UGCGG 1441 U-UUAAUUGG -NNNNAACGC CGGACA-UCU CA-CCGGAUA ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- -AGACAGC-U GAAUGAUUGU CAAUCUGAAG 1681 GUUUUACA-U GA-CUAGCUG AGAGGAGGUG CAUGGCCGUC GUCA-GUU-- CGUACU-GUG 1741 AAGCAU-CCU G-UUAAGU-C AGGCAAC-GA GCGAGACCCA CG-CC--GAC AA--UUGC-C 1801 AG-CAGCAUC ---------- ---------- ----UCCG-- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- GAUGGCUGGN -GACA-U-U- GUC-GGGAC- 2221 CGCCUCU-GC -UNA-AGGG- -GAGGAAGG- AAUGG-GCAA CGGU--AGGU CAGCAU-GCC 2281 -CCGAAUU-A U-CC-GGGCU ACACGCGGGC UACAAUGG-A CGGGA--C-A AUGGGU-A-A 2341 C-AA-CACCG -AAAGGUG-- CA-GUCAA-U CUCC-G-AAC CCCG-CCC-U UAGUUAGGAU 2401 UGCGGGUUGC AACUCACCCG CAUGAAUCUG GAAU-CUGUA GUAAUCGCGU U-UC-ACU-A 2461 U-AGCGCGGU GAAUACGUCC CUNCUCCUUG CACACACCGC CCGNCAAA-- ---CCAUCCU 2521 A-GUGGGGUU UGGAU-GA-G -UCCC-U-N- G-U------- ---------- ---------- 2581 ---------- ---CUUU--- ---------- ---------- ---------- ---------G 2641 -CCGGGGU-C GAAUCUAGGU UCCG-UG-AG G-AGG..... .......... .......... 2701 .......... .......... .......... ....~~~~~~ ~~~ // LOCUS env.CY_46 2741 bp RNA RNA 15-JUN-1993 DEFINITION str. clone CY 46. REFERENCE 1 AUTHORS Britschgi,T.B. and Fallon,R.D. TITLE PCR-amplification of mixed 16S rDNA genes from an anaerobic, JOURNAL Unpublished (1993) COMMENT Sequence information (bases 1 to 2741) Corresponding GenBank entry: L09058 title line 2:cyanide-degrading consortium BASE COUNT 128 a 128 c 141 g 100 t 2244 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... .......... .......... .......... .......... .......... 121 .......... .......... .......... .......... .......... .......... 181 .......... .......... .......... .......... .......... .......... 241 .......... .......... .......... .......... .......... .......... 301 .......... .......... .......... .......... .......... .......... 361 .......... .......... .......... .......... .......... .......... 421 .......... .......... .......... .......... .......... .......... 481 .......... .......... .......... .......... .......... .......... 541 .......... .......... .......... .......... .......... .......... 601 .......... .......... .......... .......... .......... .......... 661 .......... .......... .......... .......... .......... .......... 721 .......... .......... .......... .......... .......... .......... 781 .......... .......... .......... .......... .......... .......... 841 .......... .......... .......... .......... .......... .......... 901 .......... .......... .......... .......... .......... .......... 961 .......... .......... .......... .......... .......... .......... 1021 .......... .......... .......... .......... .......... .......... 1081 .......... .......... .......... .......... .......... .......... 1141 .......... .......... .......... .......... .......... .......... 1201 .......... .......... .......... .......... .......... .......... 1261 .......... .......... .......... .......... .......... .......... 1321 .......... .......... .......... .......... .......... .......... 1381 .AAACUU-AA A-GGAAUUG- GCGGGGG-AG C--ACCA--C A-ACAGGUGG AGCC-UGCGG 1441 U-UUAAUUGG -AUUCAACGC CGGACA-UCU CA-CCGGAUA ---------- ---------- 1501 ---------- ---------- ---------- ---------- ---------- ---------- 1561 ---------- ---------- ---------- ---------- ---------- ---------- 1621 ---------- ---------- ---------- -AGACAGC-U GAAUGAUCGU CAAUCUGAAG 1681 GUUUUACA-U GA-CUAGCUG AGAGGAGGCG CAUGGCCGUC GUCA-GUU-- CGUACU-GUG 1741 AAGCAU-CCU G-UUAAGU-C AGGCAAC-GA GCGAGACCCA CG-CC--GAC AA--UUGC-C 1801 AG-CAGCAUC ---------- ---------- ----UCCG-- ---------- ---------- 1861 ---------- ---------- ---------- ---------- ---------- ---------- 1921 ---------- ---------- ---------- ---------- ---------- ---------- 1981 ---------- ---------- ---------- ---------- ---------- ---------- 2041 ---------- ---------- ---------- ---------- ---------- ---------- 2101 ---------- ---------- ---------- ---------- ---------- ---------- 2161 ---------- ---------- ---------- GAUGGCUGGG -GACA-U-U- GUC-GGGAC- 2221 CGCCUCU-GC -UAA-AGGG- -GAGGAAGG- AAUGG-GCAA CGGU--AGGU CAGCAU-GCC 2281 -CCGAAUU-A U-CC-GGGCU ACAYGCGGGC UACAAUGG-A CGGGA--C-A AUGGGU-A-A 2341 C-AA-CACCG -AAAGGUG-- CA-GUCAA-U CUCC-G-AAC CCCG-CCC-U UAGUUAGGAU 2401 UGCGGGUUGC AACUCACCCG CAUGAAUCUG -AAU-CUGUA GUAAUCGCGU U-UC-ACU-A 2461 U-AGCNNNGU GAAUACGUCC CUGCUCCUUG CACACACCGC CCGU...... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... ....~~~~~~ ~~~ // LOCUS sym.Metpco 2741 bp RNA RNA 18-JAN-1993 DEFINITION Metopus contortus symbiont REFERENCE 1 AUTHORS Embley,T.M., Finlay,B.J. and Brown,S. TITLE RNA sequence analysis shows that the symbionts in the JOURNAL FEMS Microbiol. Lett. 0, 0-0 (1992) COMMENT Sequence information (bases 1 to 2741) Corresponding GenBank entry: Z13957 title line 2:ciliate Metopus contortus are polymorphs of a title line 3:single methanogen species BASE COUNT 219 a 186 c 260 g 180 t 1896 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 .......... ........GG GU-UU-GACU AAGCCAUGCG AGU-CGAGAG ---------- 121 ---------- ---------- ---------- ---------- --------GU ---------- 181 --------GU AAG------- ---------- --AC------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---CUCGGCA U-ACU-GCUC 301 AGU---AAC- ACGUGGUUAA --CCU-GC-C CUAAGGUGG- --AGCAU-AC -UCCCG-GGA 361 AA-CUGGGG- CUAAUCCUCC AU-A---GUG GA--U-GUAU CC--UGGAAU ---GG-U-AU 421 A-UC------ ---CUC-GAA A-GA------ ---------- -UCCG----- ---------- 481 -UCG--CCU- --UAGG--AU GGGACUGCGU -CCG-AUUA- G-GUU-G--- UUGGCG-GGG 541 UAAC-GG-CC CACCAAGCCA UUGAUCGGUA CGGGUUGU-G -GGA-GCAA- ---------- 601 ---------G AUCCCGGAGA UGGAUU-CUG A-GA-CAUGA AUCCAG-GCC C-UACGGGGC 661 GC-AGC-A-G GCGCG-CAAA CUUUACAAU- GCGA-GCAA- UCGUGAUAAG -GAAACCCUG 721 AG-UGC-C-- ---------- ---------- ---------- ----UGU-CG AU--GCA--- 781 -GGCUGUU-C A-UAUA-U-- ---------- ---------- ---CU-AAAU C--------- 841 ---------- --------A- UAU-G-UGA- AGAAAGG-GC AGGGCAAG.. .......... 901 .......... .......... .......... ...NGGCC-A CUAUUACUGG GUUUAAAGCG 961 UCCGUAGCUU -RACU-GUUA GG-DCUC-UU AGG-AAAUC- UUCGCG-CUU AA-CGUGAA- 1021 GGCGUCUA-A GAGA-UAC-C GGCA-GUC-U U-GGAAC--- --UGGGAGAG GUAAACCGUA 1081 CUUCGGGGGU AGGA-GUGAA A-UCUUGUAA U-CCUCGAGG G-ACG-A-CC UA--U-G-GC 1141 GAAGGCAG-- UUUACCA--- ---GAACAGC UUCGACAGUG AGG-GACGAA A-GC-UGGGG 1201 -GAGCAAACG GG-AUUAGAU AC-CCCGGUA G-UCCCA-GC CGUAAACAAU GUGCG-UUAG 1261 GUGUGUCGGU AAC---CUCG U--------- ---------- ---------- --GUUACUGA 1321 UGCGCCGAA- GAGAAAUCGU -GAAACGCAC CACCUG-GGA AGUACGGUC- GCAA-GGCU- 1381 GAAACUU-AA A-GGAAUUG- GCGGGGG-AG C--ACCA--C A-ACAGGUGG AGCC-UGCGG 1441 U-UUAAUUGG -AUUCAACGC CGGACA-UCU CA-CCGG... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... ....~~~~~~ ~~~ // LOCUS sym.Trmm 2741 bp RNA RNA 18-JAN-1993 DEFINITION Trimyema sp. symbiont REFERENCE 1 AUTHORS Finlay,B.J., Embley,T.M. and Fenchel,T. TITLE A new polymorphic methanogen, closely related to JOURNAL J. Gen. Microbiol. 0, 0-0 (1992) COMMENT Sequence information (bases 1 to 2741) Corresponding GenBank entry: Z16412 title line 2:Methanocorpusculum parvum, living in stable symbiosis within title line 3:the anaerobic ciliate Trimyema sp. BASE COUNT 221 a 191 c 261 g 181 t 1887 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 ..GUC-AUU- GC-UAUCAGG GU-UU-GACU AAGCCAUGCG AGU-CGAGAG ---------- 121 ---------- ---------- ---------- ---------- --------GU ---------- 181 --------GU AAG------- ---------- --AC------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---CUCGGCA U-ACU-GCUC 301 AGU---AAC- ACGUGGUUAA --CCU-GC-C CUAAGGUGG- --AGCAU-AC -UCCCG-GGA 361 AA-CUGGGG- CUAAUACUCC AU-A---GUG GA--U-GCAU CC--UGGAAU ---GG-U-GC 421 A-UC------ ---CUC-GAA A-GA------ ---------- -UCCG----- ---------- 481 -UCG--CCU- --UAGG--AU GGGACUGCGU -CCG-AUUA- G-GUU-G--- UUGGCG-GGG 541 UAAC-GG-CC CACCAAGCCA UUGAUCGGUA CGGGUUGU-G -GGA-GCAA- ---------- 601 ---------G AUCCCGGAGA UGGAUU-CUG A-GA-CAUGA AUCCAG-GCC C-UACGGGGC 661 GC-AGC-A-G GCGCG-CAAA CUUUACAAU- GCGA-GCAA- UCGUGAUAAG -GAAACCCUG 721 AG-UGC-C-- ---------- ---------- ---------- ----UGU-CG AU--GCA--- 781 -GGCUGUU-C A-UAUA-U-- ---------- ---------- ---CU-AAAU C--------- 841 ---------- --------A- UAU-G-UGA- AGAAAGG-GC A......... .......... 901 .......... .......... .......... ...UGGCC-A CUAUUACUGG GUUUAAAGCG 961 UCCGUAGCUG -GACU-GUUA GG-UCCC-UU GGG-AAAUC- UUCACG-CUU AA-CGUGAA- 1021 GGCGUCUA-A GAGA-UAC-C GGCA-GUC-U U-GGAAC--- --UGGGAGAG GUAAACCGUA 1081 CUUCGGGGGU AGGA-GUGAA A-UCUUGUAA U-CCUCGAGG G-ACG-A-CC UA--U-G-GC 1141 GAAGGCAG-- UUUACCA--- ---GAACAGC UUCGACAGUG AGG-GACGAA A-GC-UGGGG 1201 -GAGCAAACG GG-AUUAGAU AC-CCCGGUA G-UCCCA-GC CGUAAACAAU GUGCG-UUAG 1261 GUGUGUCGGU AAC---CACG C--------- ---------- ---------- --GUUACUGA 1321 UGCGCCGAA- GAGAAAUCGU -GAAACGCAC CACCUG-GGA AGUACGGUC- GCAA-GGCU- 1381 GAAACUU-AA A-GGAAUUG- GCGGGGG-AG C--ACCA--C A-ACAGGUGG AGCC-UGCGG 1441 U-UUAAUUGG -AUUCAACGC CGGACA-UCU CA-CCGG... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... ....~~~~~~ ~~~ // LOCUS sym.Trmmco 2741 bp RNA RNA 02-DEC-1992 DEFINITION Trimyema compressa symbiont REFERENCE 1 AUTHORS Finlay,B.J., Embley,T.M. and Fenchel,T. TITLE A new polymorphic methanogen, closely related to JOURNAL Unpublished (1992) COMMENT Sequence information (bases 1 to 2741) Corresponding GenBank entry: M96976 title line 2:Methanocorpusculum parvum, living in stable symbiosis title line 3:within the anaerobic ciliate Trimyema compressa BASE COUNT 221 a 191 c 261 g 181 t 1887 others ORIGIN 1 .......... .......... .......... .......... .......... .......... 61 ..GUC-AUU- GCUAU-CAGG GU-UU-GACU AAGCCAUGCG AGU-CGAGAG ---------- 121 ---------- ---------- ---------- ---------- --------GU ---------- 181 --------GU AAG------- ---------- --AC------ ---------- ---------- 241 ---------- ---------- ---------- ---------- ---CUCGGCA U-ACU-GCUC 301 AGU---AAC- ACGUGGUUAA --CCU-GC-C CUAAGGUGG- --AGCAU-AC -UCCCG-GGA 361 AA-CUGGGG- CUAAUACUCC AU-A---GUG GA--U-GCAU CC--UGGAAU ---GG-U-GC 421 A-UC------ ---CUC-GAA A-GA------ ---------- -UCCG----- ---------- 481 -UCG--CCU- --UAGG--AU GGGACUGCGU -CCG-AUUA- G-GUU-G--- UUGGCG-GGG 541 UAAC-GG-CC CACCAAGCCA UUGAUCGGUA CGGGUUGU-G -GGA-GCAA- ---------- 601 ---------G AUCCCGGAGA UGGAUU-CUG A-GA-CAUGA AUCCAG-GCC C-UACGGGGC 661 GC-AGC-A-G GCGCG-CAAA CUUUACAAU- GCGA-GCAA- UCGUGAUAAG -GAAACCCUG 721 AG-UGC-C-- ---------- ---------- ---------- ----UGU-CG AU--GCA--- 781 -GGCUGUU-C A-UAUA-U-- ---------- ---------- ---CU-AAAU C--------- 841 ---------- --------A- UAU-G-UGA- AGAAAGG-GC A......... .......... 901 .......... .......... .......... ...UGGCC-A CUAUUACUGG GUUUAAAGCG 961 UCCGUAGCUG -GACU-GUUA GG-UCCC-UU GGG-AAAUC- UUCACG-CUU AA-CGUGAA- 1021 GGCGUCUA-A GAGA-UAC-C GGCA-GUC-U U-GGAAC--- --UGGGAGAG GUAAACCGUA 1081 CUUCGGGGGU AGGA-GUGAA A-UCUUGUAA U-CCUCGAGG G-ACG-A-CC UA--U-G-GC 1141 GAAGGCAG-- UUUACCA--- ---GAACAGC UUCGACAGUG AGG-GACGAA A-GC-UGGGG 1201 -GAGCAAACG GG-AUUAGAU AC-CCCGGUA G-UCCCA-GC CGUAAACAAU GUGCG-UUAG 1261 GUGUGUCGGU AAC---CACG C--------- ---------- ---------- --GUUACUGA 1321 UGCGCCGAA- GAGAAAUCGU -GAAACGCAC CACCUG-GGA AGUACGGUC- GCAA-GGCU- 1381 GAAACUU-AA A-GGAAUUG- GCGGGGG-AG C--ACCA--C A-ACAGGUGG AGCC-UGCGG 1441 U-UUAAUUGG -AUUCAACGC CGGACA-UCU CA-CCGG... .......... .......... 1501 .......... .......... .......... .......... .......... .......... 1561 .......... .......... .......... .......... .......... .......... 1621 .......... .......... .......... .......... .......... .......... 1681 .......... .......... .......... .......... .......... .......... 1741 .......... .......... .......... .......... .......... .......... 1801 .......... .......... .......... .......... .......... .......... 1861 .......... .......... .......... .......... .......... .......... 1921 .......... .......... .......... .......... .......... .......... 1981 .......... .......... .......... .......... .......... .......... 2041 .......... .......... .......... .......... .......... .......... 2101 .......... .......... .......... .......... .......... .......... 2161 .......... .......... .......... .......... .......... .......... 2221 .......... .......... .......... .......... .......... .......... 2281 .......... .......... .......... .......... .......... .......... 2341 .......... .......... .......... .......... .......... .......... 2401 .......... .......... .......... .......... .......... .......... 2461 .......... .......... .......... .......... .......... .......... 2521 .......... .......... .......... .......... .......... .......... 2581 .......... .......... .......... .......... .......... .......... 2641 .......... .......... .......... .......... .......... .......... 2701 .......... .......... .......... ....~~~~~~ ~~~ // LOCUS env.CY_49 2741 bp RNA RNA 15-JUN-1993 DEFINITION str. clone CY 49. REFERENCE 1 AUTHORS Britschgi,T.B. and Fallon,R.D. TITLE PCR-amplification of mixed 16S rDNA genes from an anaerobic, JOURNAL Unpublished (1993) COMMENT Sequence information (bases 1 to 2741) Corresponding GenBank entry: L09059 title line 2:cyanide-degrading consortium BASE COUNT 120 a 133 c 151 g 91 t 2246 others ORIGIN 1 .......... ....