CC = @CC@
CFLAGS= @CFLAGS@
LDFLAGS= @LDFLAGS@
LOADLIBES= @LIBS@
CPPFLAGS = @CPPFLAGS@

VERSION=@VERSION@
ARCHITECTURE=@ARCHITECTURE@

# PREFIXDIR is the "top level" directory in which to place the
# installed gene editor.
# By default things will be installed in the following subdirectories
# of PREFIXDIR: PREFIXDIR/bin and PREFIXDIR/lib/ale.
PREFIXDIR=@prefix@

# Where to put data files that ale uses
LIBDIR=${PREFIXDIR}/lib/ale/${VERSION}

# Where to put architecture-specific files, like utility executables 
ARCHDIR=${LIBDIR}/${ARCHITECTURE}

SOURCES = tabl-gb.c gb-tabl.c \
	  gdbm.c gdbmgenes.h \
	  embl-tabl.c tabl-embl.c \
	  fasta-tabl.c tabl-fasta.c \
	  phylip-tabl.c \
	  lenstring.c lenstring.h \
	  hash.h hash.c \
	  xmalloc.c xmalloc.h \
	  getopt.c getopt1.c getopt.h \
	  careful.c careful.h \
	  ring.h

# The configure script sets this to 'gdbm' if the gdbm libraries are
# installed, or to the empty string otherwise.  This means that we'll
# build gdbm on systems that have the library, and just omit it
# otherwise.
GDBM_EXEC = @GDBM_EXEC@

EXECS = tabl-gb gb-tabl \
        ${GDBM_EXEC} \
	embl-tabl tabl-embl \
	fasta-tabl tabl-fasta \
	phylip-tabl

all: ${EXECS}

TABL_GB_OBJS = tabl-gb.o careful.o
tabl-gb: ${TABL_GB_OBJS}
	${CC} ${CFLAGS} ${TABL_GB_OBJS} ${LOADLIBES} -o tabl-gb
tabl-gb.o: tabl-gb.c careful.h

GB_TABL_OBJS = gb-tabl.o lenstring.o xmalloc.o hash.o careful.o
gb-tabl: ${GB_TABL_OBJS}
	${CC} ${CFLAGS} ${GB_TABL_OBJS} ${LOADLIBES} -o gb-tabl
gb-tabl.o: gb-tabl.c lenstring.h careful.h

GDBM_OBJS = gdbm.o getopt.o getopt1.o xmalloc.o lenstring.o hash.o careful.o
gdbm: ${GDBM_OBJS}
	${CC} ${CFLAGS} ${LDFLAGS} ${GDBM_OBJS} ${LOADLIBES} -o gdbm
gdbm.o: gdbm.c ring.h getopt.h xmalloc.h lenstring.h hash.h gdbmgenes.h \
	careful.h Makefile
	${CC} ${CFLAGS} ${CPPFLAGS} -DVERSION='"${VERSION}"' -c gdbm.c

EMBL_TABL_OBJS = embl-tabl.o lenstring.o xmalloc.o hash.o careful.o
embl-tabl: ${EMBL_TABL_OBJS}
	${CC} ${CFLAGS} ${EMBL_TABL_OBJS} ${LOADLIBES} -o embl-tabl
embl-tabl.o: embl-tabl.c xmalloc.h lenstring.h hash.h careful.h

TABL_EMBL_OBJS = tabl-embl.o lenstring.o xmalloc.o careful.o
tabl-embl: ${TABL_EMBL_OBJS}
	${CC} ${CFLAGS} ${TABL_EMBL_OBJS} ${LOADLIBES} -o tabl-embl
tabl-embl.o: tabl-embl.c xmalloc.h lenstring.h careful.h

FASTA_TABL_OBJS = fasta-tabl.o lenstring.o xmalloc.o hash.o careful.o
fasta-tabl: ${FASTA_TABL_OBJS}
	${CC} ${CFLAGS} ${FASTA_TABL_OBJS} ${LOADLIBES} -o fasta-tabl
fasta-tabl.o: fasta-tabl.c xmalloc.h lenstring.h hash.h careful.h

TABL_FASTA_OBJS = tabl-fasta.o lenstring.o xmalloc.o careful.o
tabl-fasta: ${TABL_FASTA_OBJS}
	${CC} ${CFLAGS} ${TABL_FASTA_OBJS} ${LOADLIBES} -o tabl-fasta
tabl-fasta.o: tabl-fasta.c xmalloc.h lenstring.h careful.h

PHYLIP_TABL_OBJS = phylip-tabl.o getopt.o getopt1.o xmalloc.o lenstring.o \
		   hash.o careful.o
phylip-tabl: ${PHYLIP_TABL_OBJS}
	${CC} ${CFLAGS} ${PHYLIP_TABL_OBJS} ${LOADLIBES} -o phylip-tabl
phylip-tabl.o: phylip-tabl.c xmalloc.h getopt.h lenstring.h hash.h careful.o \
	Makefile
	${CC} ${CFLAGS} -DVERSION='"${VERSION}"' -c phylip-tabl.c

lenstring.o: lenstring.c lenstring.h
xmalloc.o: xmalloc.c xmalloc.h
hash.o: hash.c hash.h xmalloc.h
getopt.o: getopt.c getopt.h
getopt1.o: getopt1.c
careful.o: careful.c careful.h

tags TAGS: ${SOURCES} Makefile
	etags ${SOURCES}

clean:
	rm -f ${EXECS} *.o

install: all
	@echo "Installing alignment readers and writers..."
	[ -d ${ARCHDIR} ] || mkdir -p ${ARCHDIR}
	cp ${EXECS} ${ARCHDIR}


uninstall: 
	@echo "Uninstalling alignment readers and writers..."
	(cd ${ARCHDIR}; rm ${EXECS})

### This target is called by the top-level Makefile to create and
### populate the readers subdirectory of a distribution.  DISTDIR is the
### name that subdirectory should have.
dist-dir: 
	mkdir ${DISTDIR}
	ln .gdbinit Makefile.in ${DISTDIR}
	ln ${SOURCES} ${DISTDIR}

# Local Variables:
# version-control: never
# End: